Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G000344`

染色体: Chr01 坐标: 7014010-7031591 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G000344`
名称	SmilChr01G000344
描述	rho GTPase-activating protein 7-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	7014010 - 7031591 / `+`

ID 对照

NCBI Gene ID	`LOC131016500`
GeneID	`131016500`
locus_tag	`-`
NCBI Name	`LOC131016500`
原始查询	`LOC131016500`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	rho GTPase-activating protein 7-like
产物	rho GTPase-activating protein 7-like
Arabidopsis	`AT5G19390` (AT5G19390) Rho GTPase activation protein (RhoGAP) with PH domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:832059] identity=67.5; qcov=1.02; evalue=0; confidence=high
Rice	`Os07g0658300` (Spin6.2) - identity=67.9; qcov=0.983; evalue=0; confidence=high
GO	GO:0007165 (signal transduction)
KEGG	-
Pfam	PF00169 (PH); PF00620 (RhoGAP); PF14389 (Lzipper-MIP1)
InterPro	-
eggNOG	-
NR	GeneID:131016500

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057801187.1`
2	Cytoplasm	细胞质	0.20000	`XP_057801187.1`
3	Cytosol	细胞质基质	0.20000	`XP_057801187.1`
4	Nucleus	细胞核	0.00000	`XP_057801187.1`
5	Chromosome	染色体	0.00000	`XP_057801187.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:7014353`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B24,B68,C85
`Chr1:7015200`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C75
`Chr1:7015570`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B109
`Chr1:7016057`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:7020761`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B125,B90
`Chr1:7020938`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C49
`Chr1:7020983`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B109
`Chr1:7024400`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B109
`Chr1:7024427`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A9,B107,B25,C80
`Chr1:7024554`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B138,B55
`Chr1:7024563`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B50,C53,C58,C78
`Chr1:7024696`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801187.1

873 aa

436

873

RhoGAP

Lzipper-MIP1

PF00169 PH 20-124 aa PF00620 RhoGAP 181-326 aa PF14389 Lzipper-MIP1 617-697 aa

XP_057801195.1

873 aa

436

873

RhoGAP

Lzipper-MIP1

PF00169 PH 20-124 aa PF00620 RhoGAP 181-326 aa PF14389 Lzipper-MIP1 617-697 aa

XP_057801200.1

872 aa

436

872

RhoGAP

Lzipper-MIP1

PF00169 PH 20-124 aa PF00620 RhoGAP 181-325 aa PF14389 Lzipper-MIP1 616-696 aa

XP_057801205.1

872 aa

436

872

RhoGAP

Lzipper-MIP1

PF00169 PH 20-124 aa PF00620 RhoGAP 181-325 aa PF14389 Lzipper-MIP1 616-696 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801187.1`	Pfam	`PF00169`	PH	Domain	20	124	2.8e-13	51.0	PH domain
`XP_057801187.1`	Pfam	`PF00620`	RhoGAP	Domain	181	326	1.2e-32	113.5	RhoGAP domain
`XP_057801187.1`	Pfam	`PF14389`	Lzipper-MIP1	Family	617	697	3.5e-21	76.1	Leucine-zipper of ternary complex factor MIP1
`XP_057801195.1`	Pfam	`PF00169`	PH	Domain	20	124	2.8e-13	51.0	PH domain
`XP_057801195.1`	Pfam	`PF00620`	RhoGAP	Domain	181	326	1.2e-32	113.5	RhoGAP domain
`XP_057801195.1`	Pfam	`PF14389`	Lzipper-MIP1	Family	617	697	3.5e-21	76.1	Leucine-zipper of ternary complex factor MIP1
`XP_057801200.1`	Pfam	`PF00169`	PH	Domain	20	124	2.8e-13	51.0	PH domain
`XP_057801200.1`	Pfam	`PF00620`	RhoGAP	Domain	181	325	5.3e-34	117.9	RhoGAP domain
`XP_057801200.1`	Pfam	`PF14389`	Lzipper-MIP1	Family	616	696	3.5e-21	76.1	Leucine-zipper of ternary complex factor MIP1
`XP_057801205.1`	Pfam	`PF00169`	PH	Domain	20	124	2.8e-13	51.0	PH domain
`XP_057801205.1`	Pfam	`PF00620`	RhoGAP	Domain	181	325	5.3e-34	117.9	RhoGAP domain
`XP_057801205.1`	Pfam	`PF14389`	Lzipper-MIP1	Family	616	696	3.5e-21	76.1	Leucine-zipper of ternary complex factor MIP1

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057945222.1
ACCGTAAACACTCACCCAACCACCTAATCCACCCCCACCCCCACCCCCAAAACCCAACACAAACAAAAACAATAGACAGAAATGTGTGAGGAAAGGCTGATAGCACTGGTTGGTTGCTGATCTTCACCGATTGTTTTTGCCCGAGTTCGATCCGGGCCGACCCGTGGTTGAGTTCCAGCTGAGATGGTAACTCATCTCTGAGAAAAGGGGGGAAAATGTCTGCCACTCTTGCCGCATTTGAGCGCCCTCGTATAGGGAAC...

XM_057945212.1
AACACTCACCCAACCACCTAATCCACCCCCACCCCCACCCCCAAAACCCAACACAAACAAAAACAATAGACAGAAATGTGTGAGGAAAGGCTGATAGCACTGGTTGGTTGCTGATCTTCACCGATTGTTTTTGCCCGAGTTCGATCCGGGCCGACCCGTGGTTGAGTTCCAGCTGAGATGGTAACTCATCTCTGAGAAAAGGGGGGAAAATGTCTGCCACTCTTGCCGCATTTGAGCGCCCTCGTATAGGGAACTCGAAT...

CDS

4 records

下载 CDS FASTA

LOC131016500
ATGTCTGCCACTCTTGCCGCATTTGAGCGCCCTCGTATAGGGAACTCGAATACGATATTCAAGAGTGGGCATCTGCTCATATCTTCAAAAGGGTTAGGGTGGAAGTCCTGGAAGAAGCGTTGGTTTATCCTTACTCGCACTTCTTTGGTCTTCTTCAAGAACGACCCAAGTGCACTACCGCAGCGTGGTGGTGAAGTAAATTTAACTTTGGGTGGCATTGACTTAAATAATTCAGGAAGCGTTGTTGTTAGAGAAGACAA...

Protein

4 records

下载 Protein FASTA

XP_057801187.1
MSATLAAFERPRIGNSNTIFKSGHLLISSKGLGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALEHALAQAPNAALVMGQNGIFRSDTSDTIEGSFHQWRDKRPVKSLVVGRPILLALEDIDGGPSFLEKALRFLEKYGTKVEGILRQSADVEEVDRRVQEYEQGKTDFDLDEDAHVIGDCVKHVLRELPSSPVPASCCTALLE...

XP_057801195.1
MSATLAAFERPRIGNSNTIFKSGHLLISSKGLGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALEHALAQAPNAALVMGQNGIFRSDTSDTIEGSFHQWRDKRPVKSLVVGRPILLALEDIDGGPSFLEKALRFLEKYGTKVEGILRQSADVEEVDRRVQEYEQGKTDFDLDEDAHVIGDCVKHVLRELPSSPVPASCCTALLE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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