当前解析结果
SmilChr03G002347| 统一新 Gene ID | SmilChr03G002347 |
|---|---|
| 名称 | SmilChr03G002347 |
| 描述 | phosphoinositide phospholipase C 2-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 37015279 - 37018881 / - |
| NCBI Gene ID | LOC131016540 |
|---|---|
| GeneID | 131016540 |
| locus_tag | - |
| NCBI Name | LOC131016540 |
| 原始查询 | LOC131016540 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | phosphoinositide phospholipase C 2-like |
| 产物 | phosphoinositide phospholipase C 2-like |
| Arabidopsis | AT3G08510 (PLC2)phospholipase C 2 [Source:NCBI gene (formerly Entrezgene);Acc:819999] identity=58.6; qcov=1.03; evalue=0; confidence=high |
| Rice | Os03g0289300 (OsPLC2)- identity=56.2; qcov=1.02; evalue=0; confidence=high |
| GO | GO:0004435 (phosphatidylinositol-4,5-bisphosphate phospholipase C activity); GO:0006629 (lipid metabolic process); GO:0048015 (phosphatidylinositol-mediated signaling) |
| KEGG | smil00562 (Inositol phosphate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04070 (Phosphatidylinositol signaling system - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00168 (C2); PF00387 (PI-PLC-Y); PF00388 (PI-PLC-X); PF09279 (EF-hand_like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016540 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057801236.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057801236.1 |
| 3 | Cell membrane | 细胞膜 | 0.60000 | XP_057801236.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057801236.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057801236.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:37015500 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B127,B140,C18,C87 |
Chr3:37015563 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B113,B4,B75,B9 |
Chr3:37015594 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B29 |
Chr3:37015888 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C85 |
Chr3:37016017 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C37,C72 |
Chr3:37016019 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C64 |
Chr3:37016047 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B113,B4,B9,B91 |
Chr3:37016092 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B75,B80,C4 |
Chr3:37016128 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B108,B33,C23 |
Chr3:37016146 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | C22 |
Chr3:37016146 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C22 |
Chr3:37017066 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B133,B42,B43,B90,B92 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057801236.1PF09279
EF-hand_like 25-96 aa
PF00388
PI-PLC-X 112-254 aa
PF00387
PI-PLC-Y 337-430 aa
PF00168
C2 453-552 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057801236.1 |
Pfam | PF09279 |
EF-hand_like | Domain | 25 | 96 | 7.7e-06 | 27.0 | Phosphoinositide-specific phospholipase C, efhand-like |
XP_057801236.1 |
Pfam | PF00388 |
PI-PLC-X | Family | 112 | 254 | 2.1e-52 | 177.3 | Phosphatidylinositol-specific phospholipase C, X domain |
XP_057801236.1 |
Pfam | PF00387 |
PI-PLC-Y | Family | 337 | 430 | 1.1e-31 | 110.2 | Phosphatidylinositol-specific phospholipase C, Y domain |
XP_057801236.1 |
Pfam | PF00168 |
C2 | Domain | 453 | 552 | 9.5e-15 | 55.4 | C2 domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。