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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G002342

染色体: Chr03 坐标: 36920193-36924630 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G002342
名称SmilChr03G002342
描述calcium-dependent protein kinase 13
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向36920193 - 36924630 / -

ID 对照

NCBI Gene IDLOC131016542
GeneID131016542
locus_tag-
NCBI NameLOC131016542
原始查询LOC131016542

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述calcium-dependent protein kinase 13
产物calcium-dependent protein kinase 13
ArabidopsisAT3G51850 (CPK13)
calcium-dependent protein kinase 13 [Source:NCBI gene (formerly Entrezgene);Acc:824348]
identity=85.2; qcov=0.998; evalue=0; confidence=high
RiceOs05g0467000 (OsCDPK16)
-
identity=78; qcov=1.03; evalue=0; confidence=high
GOGO:0004683 (calcium/calmodulin-dependent protein kinase activity); GO:0005509 (calcium ion binding); GO:0005516 (calmodulin binding); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0009931 (calcium-dependent protein serine/threonine kinase activity); GO:0018105 (peptidyl-serine phosphorylation); GO:0035556 (intracellular signal transduction); GO:0046777 (protein autophosphorylation)
KEGGsmil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage)); smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage))
PfamPF00036 (EF-hand_1); PF00069 (Pkinase); PF06293 (Kdo); PF07714 (PK_Tyr_Ser-Thr); PF13202 (EF-hand_5); PF13405 (EF-hand_6); PF13499 (EF-hand_7); PF13833 (EF-hand_8)
InterPro-
eggNOG-
NRGeneID:131016542

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057801240.1
2 Cytosol 细胞质基质 0.80000 XP_057801240.1
3 Cytoplasm 细胞质 0.20000 XP_057801240.1
4 Nucleus 细胞核 0.00000 XP_057801240.1
5 Chromosome 染色体 0.00000 XP_057801240.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:36920909 G A EMS_canonical_SNV CDS_variant 1 D6
Chr3:36921273 C T EMS_canonical_SNV CDS_variant 2 B9,D6
Chr3:36921275 C T EMS_canonical_SNV CDS_variant 2 B9,D6
Chr3:36921299 T TA 1bp_insertion frameshift_variant 48 A14,A16,A20,A5,A7,A9,B103,B106,B108,B112,B119,B122,B128,B129,B133,B134,B135,B138,B15,B21,B25,B26,B34,B36,B42,B45,B56,B71,B90,C12,C19,C26,C27,C31,C39,C5,C52,C59,C6,C60,C61,C67,C69,C76,D3,D5,D6,D8
Chr3:36921306 T TTC 2bp_insertion frameshift_variant 48 A14,A16,A20,A5,A7,A9,B103,B106,B108,B112,B119,B122,B128,B129,B133,B134,B135,B138,B15,B21,B25,B26,B34,B36,B42,B45,B56,B71,B90,C12,C19,C26,C27,C31,C39,C5,C52,C59,C6,C60,C61,C67,C69,C76,D3,D5,D6,D8
Chr3:36922224 G A EMS_canonical_SNV CDS_variant 2 B107,C57
Chr3:36923702 C T EMS_canonical_SNV CDS_variant 1 B56
Chr3:36923916 G A EMS_canonical_SNV CDS_variant 1 D10
Chr3:36923979 C T EMS_canonical_SNV CDS_variant 3 B140,C27,C36
Chr3:36924185 C T EMS_canonical_SNV CDS_variant 1 B127
Chr3:36924197 C T EMS_canonical_SNV CDS_variant 2 B106,C22
Chr3:36924236 ACT A 2bp_deletion frameshift_variant 54 A11,A13,A2,A25,A5,A9,B100,B102,B108,B114,B123,B130,B131,B137,B139,B140,B16,B18,B2,B20,B38,B46,B47,B48,B53,B68,B81,B89,B9,B94,B96,B99,C12,C15,C21,C22,C27,C28,C40,C41,C44,C49,C52,C55,C56,C57,C60,C7,C70,C75,C78,C80,D5,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801240.1
528 aa
N
1
264
528
Pkinase
PK_Tyr_Ser-Thr
Kdo
EF-hand_7
EF-hand_5
EF-hand_1
EF-hand_6
EF-hand_8
EF-hand_8
EF-hand_7
EF-hand_1
EF-hand_6
EF-hand_5
EF-hand_8
EF-hand_1
EF-hand_5
EF-hand_6
C
PF00069 Pkinase 57-313 aa PF07714 PK_Tyr_Ser-Thr 58-309 aa PF06293 Kdo 84-201 aa PF13499 EF-hand_7 360-420 aa PF13202 EF-hand_5 361-383 aa PF00036 EF-hand_1 361-386 aa PF13405 EF-hand_6 361-386 aa PF13833 EF-hand_8 390-418 aa PF13833 EF-hand_8 409-457 aa PF13499 EF-hand_7 431-494 aa PF00036 EF-hand_1 433-458 aa PF13405 EF-hand_6 433-459 aa PF13202 EF-hand_5 435-457 aa PF13833 EF-hand_8 469-494 aa PF00036 EF-hand_1 470-495 aa PF13202 EF-hand_5 471-493 aa PF13405 EF-hand_6 471-494 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057801240.1 Pfam PF00069 Pkinase Domain 57 313 4.5e-76 256.4 Protein kinase domain
XP_057801240.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 58 309 9.1e-25 88.1 Protein tyrosine and serine/threonine kinase
XP_057801240.1 Pfam PF06293 Kdo Family 84 201 6.8e-05 23.1 Lipopolysaccharide kinase (Kdo/WaaP) family
XP_057801240.1 Pfam PF13499 EF-hand_7 Domain 360 420 1.7e-29 102.7 EF-hand domain pair
XP_057801240.1 Pfam PF13202 EF-hand_5 Domain 361 383 9.1e-21 73.0 EF hand
XP_057801240.1 Pfam PF00036 EF-hand_1 Domain 361 386 1e-29 100.5 EF hand domain
XP_057801240.1 Pfam PF13405 EF-hand_6 Domain 361 386 1.2e-25 87.4 EF-hand domain
XP_057801240.1 Pfam PF13833 EF-hand_8 Domain 390 418 1.3e-16 60.8 EF-hand domain pair
XP_057801240.1 Pfam PF13833 EF-hand_8 Domain 409 457 1.3e-16 60.8 EF-hand domain pair
XP_057801240.1 Pfam PF13499 EF-hand_7 Domain 431 494 1.7e-29 102.7 EF-hand domain pair
XP_057801240.1 Pfam PF00036 EF-hand_1 Domain 433 458 1e-29 100.5 EF hand domain
XP_057801240.1 Pfam PF13405 EF-hand_6 Domain 433 459 1.2e-25 87.4 EF-hand domain
XP_057801240.1 Pfam PF13202 EF-hand_5 Domain 435 457 9.1e-21 73.0 EF hand
XP_057801240.1 Pfam PF13833 EF-hand_8 Domain 469 494 1.3e-16 60.8 EF-hand domain pair
XP_057801240.1 Pfam PF00036 EF-hand_1 Domain 470 495 1e-29 100.5 EF hand domain
XP_057801240.1 Pfam PF13202 EF-hand_5 Domain 471 493 9.1e-21 73.0 EF hand
XP_057801240.1 Pfam PF13405 EF-hand_6 Domain 471 494 1.2e-25 87.4 EF-hand domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057945257.1
TCTCACTCCTTGTGTATATAATAAAAAATAAAGATTTCTCACTCTACAAAAGTATTAGAAGAGCCGTTTCCGTACACACCACTAATTGAAGACTGGAAAACCCCCTTTCCCTTTTCACACAGAAACACACAAATTCTGCCATTTGTGCGTGAAAAATCACACGCATTGTCTCCCCTAAGCTCCACTTCACTCCGAATGAGGCTAGGGTTTCACTCTCCAGCTATGTGAGAGCCTAGCTACTGCGCTTGGAGTTAGGGTTT...

CDS

1 records

下载 CDS FASTA
LOC131016542
ATGGGGAACTGCTGCAGATCTCCGGCAGCCGTCGCTAGAGAAGACGTCAAATCTTCCAACTTCTCCGGCCATGATCACGGCCGGAAGGAGAAGTCGTCGGGCAACGTGAAGAAAGCAATCACAGTTCTGACAGATGTGAAGAAGGAGAACATTGATGAGAAGTATTTAATCGACAGAGAGCTCGGCCGCGGCGAATTCGGGGTCACTTATCTATGCATTGACCGGGAGACGAAGGAGCTGCTGGCCTGCAAGTCAATATC...

Protein

1 records

下载 Protein FASTA
XP_057801240.1
MGNCCRSPAAVAREDVKSSNFSGHDHGRKEKSSGNVKKAITVLTDVKKENIDEKYLIDRELGRGEFGVTYLCIDRETKELLACKSISKRKLRTAVDVEDVRREVAIMKHLPRNSSIVSFKEACEDENAVHLVMELCEGGELFDRIVARGHYTERAAAAVMRTIVEVVQLCHKHGVIHRDLKPENFLFANKKENSPLKAIDFGLSIFFKPGERFSEIVGSPYYMAPEVLKRSYGPEIDIWSAGVILYILLCGVPPFWAESE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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