Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G002346`

染色体: Chr03 坐标: 36987825-36991813 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G002346`
名称	SmilChr03G002346
描述	uncharacterized SmilChr03G002346
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	36987825 - 36991813 / `-`

ID 对照

NCBI Gene ID	`LOC131016547`
GeneID	`131016547`
locus_tag	`-`
NCBI Name	`LOC131016547`
原始查询	`LOC131016547`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	DNAJ heat shock family protein [Source:NCBI gene (formerly Entrezgene);Acc:831415]; symbol=AT5G01390; hit=AT5G01390; species=arabidopsis; confidence=high
产物	DNAJ heat shock family protein [Source:NCBI gene (formerly Entrezgene);Acc:831415]; symbol=AT5G01390; hit=AT5G01390; species=arabidopsis; confidence=high
Arabidopsis	`AT5G01390` (AT5G01390) DNAJ heat shock family protein [Source:NCBI gene (formerly Entrezgene);Acc:831415] identity=75.6; qcov=1; evalue=5.45e-179; confidence=high
Rice	`Os05g0562300` (OsDjB7) - identity=69.2; qcov=1.05; evalue=3.57e-158; confidence=high
GO	GO:0005829 (cytosol); GO:0051082 (GO:0051082); GO:0051085 (GO:0051085); GO:0051087 (protein-folding chaperone binding)
KEGG	-
Pfam	PF00226 (DnaJ); PF01556 (DnaJ_C)
InterPro	-
eggNOG	-
NR	GeneID:131016547

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057801249.1`
2	Cytosol	细胞质基质	1.00000	`XP_057801249.1`
3	Nucleus	细胞核	0.40000	`XP_057801249.1`
4	Chromosome	染色体	0.00000	`XP_057801249.1`
5	Centromere	着丝粒	0.00000	`XP_057801249.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:36988060`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C65
`Chr3:36988096`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B100,B119,B34
`Chr3:36988117`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B73,C78,C86
`Chr3:36988254`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C37
`Chr3:36990968`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C18
`Chr3:36991038`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr3:36991188`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B100
`Chr3:36991404`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801249.1

345 aa

172

345

DnaJ

DnaJ_C

PF00226 DnaJ 4-67 aa PF01556 DnaJ_C 171-327 aa

XP_057801250.1

344 aa

172

344

DnaJ

DnaJ_C

PF00226 DnaJ 4-67 aa PF01556 DnaJ_C 171-326 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801249.1`	Pfam	`PF00226`	DnaJ	Domain	4	67	1.6e-27	96.1	DnaJ domain
`XP_057801249.1`	Pfam	`PF01556`	DnaJ_C	Domain	171	327	3e-41	141.7	DnaJ C terminal domain
`XP_057801250.1`	Pfam	`PF00226`	DnaJ	Domain	4	67	1.6e-27	96.1	DnaJ domain
`XP_057801250.1`	Pfam	`PF01556`	DnaJ_C	Domain	171	326	3e-41	141.7	DnaJ C terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057945266.1
AAATGGTTTTGTGAAAAAACAAAAGTAGAAACTTATGGGCCAGCGGCCCAACACCTGAACCAGAAAATTGGAAGGCAGAGACGTGAGTCCAGCACGAAATGGAGGATTACTTTATACGAAGAGTTTTATTGATTGTCAGAACTCACAAGTAAACAAAACTCTCCAAGAATCATCACACAACCGAAGAGAATTGAAGAAGAAGGTGGTCGAGAGAGAGAGAGTGAAAGTGGAGGTGGTAGAGAGAGAGCATGGGGGTGGAC...

XM_057945267.1
ATTGATTGTCAGAACTCACAAGTAAACAAAACTCTCCAAGAATCATCACACAACCGAAGAGAATTGAAGAAGAAGGTGGTCGAGAGAGAGAGAGTGAAAGTGGAGGTGGTAGAGAGAGAGCATGGGGGTGGACTACTACAAAATACTTCAGGTGGACCGCTCCGCCAAAGAAGACGACCTCAAGAAAGCCTACCGCAAACTCGCCATGAAATGGCACCCAGACAAAAACCCTAACAACAAGAAAGAAGCCGAAGCCAAAT...

CDS

2 records

下载 CDS FASTA

LOC131016547
ATGGGGGTGGACTACTACAAAATACTTCAGGTGGACCGCTCCGCCAAAGAAGACGACCTCAAGAAAGCCTACCGCAAACTCGCCATGAAATGGCACCCAGACAAAAACCCTAACAACAAGAAAGAAGCCGAAGCCAAATTCAAGACAATCTCCGAAGCCTACGACGTATTGAGTGATCCGCAGAAGAGGGCGGTTTATGATCAGTACGGCGAGGAGGGTTTGAAGGGGCAGATGCCGCCGCCTGATGCCGGCGGTTTTTC...

Protein

2 records

下载 Protein FASTA

XP_057801249.1
MGVDYYKILQVDRSAKEDDLKKAYRKLAMKWHPDKNPNNKKEAEAKFKTISEAYDVLSDPQKRAVYDQYGEEGLKGQMPPPDAGGFSGMRDGGGASFRFNPRNPDDIFSEFFGFSSPFGGMGDMGGGSRAGASGFSRTVFGDDIFTSFRNAAASGEGGSGGMPRKAAAIERMLPCGLEDLYKGTTKKMKISRDVIDSSGRPSTMEEILTIEIKPGWKKGTKITFPEKGNEQRGVIPSDLVFIIDEKPHNVFKRDGNDLVV...

XP_057801250.1
MGVDYYKILQVDRSAKEDDLKKAYRKLAMKWHPDKNPNNKKEAEAKFKTISEAYDVLSDPQKRAVYDQYGEEGLKGQMPPPDAGGFSGMRDGGGASFRFNPRNPDDIFSEFFGFSSPFGGMGDMGGGSRAGASGFSRTVFGDDIFTSFRNAAASGEGGSGGMPRKAAAIERMLPCGLEDLYKGTTKKMKISRDVIDSSGPSTMEEILTIEIKPGWKKGTKITFPEKGNEQRGVIPSDLVFIIDEKPHNVFKRDGNDLVVT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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