当前解析结果
SmilChr03G002386| 统一新 Gene ID | SmilChr03G002386 |
|---|---|
| 名称 | SmilChr03G002386 |
| 描述 | glycerol-3-phosphate 2-O-acyltransferase 6-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 37774393 - 37777132 / + |
| NCBI Gene ID | LOC131016584 |
|---|---|
| GeneID | 131016584 |
| locus_tag | - |
| NCBI Name | LOC131016584 |
| 原始查询 | LOC131016584 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | glycerol-3-phosphate 2-O-acyltransferase 6-like |
| 产物 | glycerol-3-phosphate 2-O-acyltransferase 6-like |
| Arabidopsis | AT2G38110 (GPAT6)glycerol-3-phosphate acyltransferase 6 [Source:NCBI gene (formerly Entrezgene);Acc:818389] identity=73; qcov=0.986; evalue=0; confidence=high |
| Rice | Os01g0855000 (GPAT)- identity=70.6; qcov=0.988; evalue=0; confidence=high |
| GO | GO:0010143 (cutin biosynthetic process); GO:0016020 (membrane); GO:0016791 (phosphatase activity); GO:0090447 (glycerol-3-phosphate 2-O-acyltransferase activity) |
| KEGG | smil00561 (Glycerolipid metabolism - Salvia miltiorrhiza (redroot sage)); smil00564 (Glycerophospholipid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01553 (Acyltransferase); PF12710 (HAD); PF23270 (HAD_RAM2_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016584 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057801276.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057801276.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057801276.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057801276.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057801276.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:37774549 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B4 |
Chr3:37774564 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C27 |
Chr3:37774611 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B108,B33,C23 |
Chr3:37774747 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr3:37774921 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B24 |
Chr3:37776094 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B123,C13 |
Chr3:37776253 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B132,C20 |
Chr3:37776445 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C32,C68 |
Chr3:37776524 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B11 |
Chr3:37776532 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C72 |
Chr3:37776649 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr3:37776697 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C13,C32,C68 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057801276.1PF23270
HAD_RAM2_N 23-209 aa
PF12710
HAD 24-200 aa
PF01553
Acyltransferase 297-398 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057801276.1 |
Pfam | PF23270 |
HAD_RAM2_N | Domain | 23 | 209 | 1.6e-66 | 224.3 | Glycerol-3-phosphate acyltransferase RAM2-like, HAD-like domain |
XP_057801276.1 |
Pfam | PF12710 |
HAD | Family | 24 | 200 | 1.6e-16 | 62.0 | haloacid dehalogenase-like hydrolase |
XP_057801276.1 |
Pfam | PF01553 |
Acyltransferase | Family | 297 | 398 | 2.1e-09 | 38.0 | Acyltransferase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。