当前解析结果
SmilChr03G002488| 统一新 Gene ID | SmilChr03G002488 |
|---|---|
| 名称 | SmilChr03G002488 |
| 描述 | receptor-like cytoplasmic kinase 176 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 39558086 - 39561065 / + |
| NCBI Gene ID | LOC131016657 |
|---|---|
| GeneID | 131016657 |
| locus_tag | - |
| NCBI Name | LOC131016657 |
| 原始查询 | LOC131016657 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | receptor-like cytoplasmic kinase 176 |
| 产物 | receptor-like cytoplasmic kinase 176 |
| Arabidopsis | AT1G07570 (APK1A)Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837271] identity=64.4; qcov=1.01; evalue=0; confidence=high |
| Rice | Os03g0274800 (OsRLCK107)- identity=70.7; qcov=0.915; evalue=0; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016657 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057801343.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057801343.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057801343.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057801343.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057801343.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:39559193 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr3:39559229 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | B76 |
Chr3:39559229 |
AC |
A |
1bp_deletion | CDS_variant | 1 | B76 |
Chr3:39559234 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B54,B86 |
Chr3:39559270 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B99,C64,C66 |
Chr3:39559435 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B23 |
Chr3:39559780 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C3 |
Chr3:39559791 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B35,B64,C24 |
Chr3:39560051 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B54,B86 |
Chr3:39560603 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr3:39560648 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A4,B113,B138,B37 |
Chr3:39560677 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C44 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057801343.1PF00069
Pkinase 82-358 aa
PF07714
PK_Tyr_Ser-Thr 83-361 aa
XP_057801344.1PF00069
Pkinase 82-358 aa
PF07714
PK_Tyr_Ser-Thr 83-361 aa
XP_057801345.1PF00069
Pkinase 82-358 aa
PF07714
PK_Tyr_Ser-Thr 83-361 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057801343.1 |
Pfam | PF00069 |
Pkinase | Domain | 82 | 358 | 2.4e-45 | 155.7 | Protein kinase domain |
XP_057801343.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 83 | 361 | 6e-48 | 164.1 | Protein tyrosine and serine/threonine kinase |
XP_057801344.1 |
Pfam | PF00069 |
Pkinase | Domain | 82 | 358 | 2.4e-45 | 155.7 | Protein kinase domain |
XP_057801344.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 83 | 361 | 6e-48 | 164.1 | Protein tyrosine and serine/threonine kinase |
XP_057801345.1 |
Pfam | PF00069 |
Pkinase | Domain | 82 | 358 | 2.4e-45 | 155.7 | Protein kinase domain |
XP_057801345.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 83 | 361 | 6e-48 | 164.1 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。