当前解析结果
SmilChr03G002501| 统一新 Gene ID | SmilChr03G002501 |
|---|---|
| 名称 | SmilChr03G002501 |
| 描述 | E3 ubiquitin-protein ligase PRT6 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 39841903 - 39857654 / + |
| NCBI Gene ID | LOC131016667 |
|---|---|
| GeneID | 131016667 |
| locus_tag | - |
| NCBI Name | LOC131016667 |
| 原始查询 | LOC131016667 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | E3 ubiquitin-protein ligase PRT6 |
| 产物 | E3 ubiquitin-protein ligase PRT6 |
| Arabidopsis | AT5G02310 (PRT6)proteolysis 6 [Source:NCBI gene (formerly Entrezgene);Acc:830916] identity=48.2; qcov=1.03; evalue=0; confidence=high |
| Rice | Os01g0148050- identity=41.5; qcov=0.492; evalue=0; confidence=medium |
| GO | GO:0000151 (ubiquitin ligase complex); GO:0005737 (cytoplasm); GO:0008270 (zinc ion binding); GO:0016567 (protein ubiquitination); GO:0061630 (ubiquitin protein ligase activity); GO:0071596 (ubiquitin-dependent protein catabolic process via the N-end rule pathway) |
| KEGG | - |
| Pfam | PF02207 (zf-UBR); PF18995 (PRT6_C); PF22960 (WHD_UBR1); PF30856 (ARM_UBR_1_2_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016667 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057801355.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057801355.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057801355.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057801355.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057801355.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:39842933 |
TTG |
T |
2bp_deletion | frameshift_variant | 1 | A18 |
Chr3:39842933 |
TTG |
T |
2bp_deletion | CDS_variant | 1 | A18 |
Chr3:39843295 |
TG |
T |
1bp_deletion | frameshift_variant | 2 | A21,B139 |
Chr3:39843295 |
TG |
T |
1bp_deletion | CDS_variant | 2 | A21,B139 |
Chr3:39843603 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B100,B59 |
Chr3:39843617 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B5,B57 |
Chr3:39845834 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B28,B54,B86 |
Chr3:39846501 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B24,B91 |
Chr3:39846733 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B38 |
Chr3:39848251 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B39 |
Chr3:39848284 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B100 |
Chr3:39848693 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A6,B4,C54 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057801355.1PF02207
zf-UBR 101-168 aa
PF30856
ARM_UBR_1_2_3 270-468 aa
PF30856
ARM_UBR_1_2_3 628-792 aa
PF22960
WHD_UBR1 822-908 aa
PF18995
PRT6_C 1526-1983 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057801355.1 |
Pfam | PF02207 |
zf-UBR | Domain | 101 | 168 | 5.8e-20 | 71.9 | Putative zinc finger in N-recognin (UBR box) |
XP_057801355.1 |
Pfam | PF30856 |
ARM_UBR_1_2_3 | Repeat | 270 | 468 | 2.3e-30 | 106.2 | UBR1/2/3-like ARM repeat domain |
XP_057801355.1 |
Pfam | PF30856 |
ARM_UBR_1_2_3 | Repeat | 628 | 792 | 2.3e-30 | 106.2 | UBR1/2/3-like ARM repeat domain |
XP_057801355.1 |
Pfam | PF22960 |
WHD_UBR1 | Domain | 822 | 908 | 1.1e-18 | 67.9 | E3 ubiquitin-protein ligase UBR1-like, winged-helix domain |
XP_057801355.1 |
Pfam | PF18995 |
PRT6_C | Domain | 1526 | 1983 | 4.4e-92 | 310.0 | Proteolysis_6 C-terminal |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。