Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G002503`

染色体: Chr03 坐标: 39865434-39871291 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G002503`
名称	SmilChr03G002503
描述	transcription factor MYB3R-3-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	39865434 - 39871291 / `-`

ID 对照

NCBI Gene ID	`LOC131016668`
GeneID	`131016668`
locus_tag	`-`
NCBI Name	`LOC131016668`
原始查询	`LOC131016668`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transcription factor MYB3R-3-like
产物	transcription factor MYB3R-3-like
Arabidopsis	`AT5G02320` (MYB3R-5) myb domain protein 3r-5 [Source:NCBI gene (formerly Entrezgene);Acc:831802] identity=48.9; qcov=0.979; evalue=1.79e-146; confidence=high
Rice	`Os01g0841500` (OsMYB3R-2) - identity=71; qcov=0.422; evalue=5.29e-102; confidence=low
GO	GO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription)
KEGG	-
Pfam	PF00249 (Myb_DNA-binding); PF13921 (Myb_DNA-bind_6)
InterPro	-
eggNOG	-
NR	GeneID:131016668

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057801356.1`
2	Chromosome	染色体	0.00000	`XP_057801356.1`
3	Centromere	着丝粒	0.00000	`XP_057801356.1`
4	Chromatin	染色质	0.00000	`XP_057801356.1`
5	Telomere	端粒	0.00000	`XP_057801356.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:39866691`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B127,B23,C27
`Chr3:39867201`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B132
`Chr3:39867226`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A13,B140,B77,C13,D7
`Chr3:39867267`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B122,B24
`Chr3:39867505`	`GC`	`G`	1bp_deletion	frameshift_variant	1	C54
`Chr3:39867505`	`GC`	`G`	1bp_deletion	CDS_variant	1	C54
`Chr3:39867581`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B24
`Chr3:39867660`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B100,B127,B23,B59,C27
`Chr3:39870667`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B125,B26,B51,B59,C15

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801356.1

524 aa

262

524

Myb_DNA-binding

Myb_DNA-bind_6

Myb_DNA-binding

Myb_DNA-bind_6

Myb_DNA-binding

Myb_DNA-bind_6

PF00249 Myb_DNA-binding 59-105 aa PF13921 Myb_DNA-bind_6 62-118 aa PF00249 Myb_DNA-binding 111-157 aa PF13921 Myb_DNA-bind_6 114-174 aa PF00249 Myb_DNA-binding 163-206 aa PF13921 Myb_DNA-bind_6 166-211 aa

XP_057801357.1

524 aa

262

524

Myb_DNA-binding

Myb_DNA-bind_6

Myb_DNA-binding

Myb_DNA-bind_6

Myb_DNA-binding

Myb_DNA-bind_6

XP_057801358.1

524 aa

262

524

Myb_DNA-binding

Myb_DNA-bind_6

Myb_DNA-binding

Myb_DNA-bind_6

Myb_DNA-binding

Myb_DNA-bind_6

XP_057801359.1

524 aa

262

524

Myb_DNA-binding

Myb_DNA-bind_6

Myb_DNA-binding

Myb_DNA-bind_6

Myb_DNA-binding

Myb_DNA-bind_6

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801356.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	59	105	1.5e-52	176.2	Myb-like DNA-binding domain
`XP_057801356.1`	Pfam	`PF13921`	Myb_DNA-bind_6	Domain	62	118	9.6e-41	138.5	Myb-like DNA-binding domain
`XP_057801356.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	111	157	1.5e-52	176.2	Myb-like DNA-binding domain
`XP_057801356.1`	Pfam	`PF13921`	Myb_DNA-bind_6	Domain	114	174	9.6e-41	138.5	Myb-like DNA-binding domain
`XP_057801356.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	163	206	1.5e-52	176.2	Myb-like DNA-binding domain
`XP_057801356.1`	Pfam	`PF13921`	Myb_DNA-bind_6	Domain	166	211	9.6e-41	138.5	Myb-like DNA-binding domain
`XP_057801357.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	59	105	1.5e-52	176.2	Myb-like DNA-binding domain
`XP_057801357.1`	Pfam	`PF13921`	Myb_DNA-bind_6	Domain	62	118	9.6e-41	138.5	Myb-like DNA-binding domain
`XP_057801357.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	111	157	1.5e-52	176.2	Myb-like DNA-binding domain
`XP_057801357.1`	Pfam	`PF13921`	Myb_DNA-bind_6	Domain	114	174	9.6e-41	138.5	Myb-like DNA-binding domain
`XP_057801357.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	163	206	1.5e-52	176.2	Myb-like DNA-binding domain
`XP_057801357.1`	Pfam	`PF13921`	Myb_DNA-bind_6	Domain	166	211	9.6e-41	138.5	Myb-like DNA-binding domain
`XP_057801358.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	59	105	1.5e-52	176.2	Myb-like DNA-binding domain
`XP_057801358.1`	Pfam	`PF13921`	Myb_DNA-bind_6	Domain	62	118	9.6e-41	138.5	Myb-like DNA-binding domain
`XP_057801358.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	111	157	1.5e-52	176.2	Myb-like DNA-binding domain
`XP_057801358.1`	Pfam	`PF13921`	Myb_DNA-bind_6	Domain	114	174	9.6e-41	138.5	Myb-like DNA-binding domain
`XP_057801358.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	163	206	1.5e-52	176.2	Myb-like DNA-binding domain
`XP_057801358.1`	Pfam	`PF13921`	Myb_DNA-bind_6	Domain	166	211	9.6e-41	138.5	Myb-like DNA-binding domain
`XP_057801359.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	59	105	1.5e-52	176.2	Myb-like DNA-binding domain
`XP_057801359.1`	Pfam	`PF13921`	Myb_DNA-bind_6	Domain	62	118	9.6e-41	138.5	Myb-like DNA-binding domain
`XP_057801359.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	111	157	1.5e-52	176.2	Myb-like DNA-binding domain
`XP_057801359.1`	Pfam	`PF13921`	Myb_DNA-bind_6	Domain	114	174	9.6e-41	138.5	Myb-like DNA-binding domain
`XP_057801359.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	163	206	1.5e-52	176.2	Myb-like DNA-binding domain
`XP_057801359.1`	Pfam	`PF13921`	Myb_DNA-bind_6	Domain	166	211	9.6e-41	138.5	Myb-like DNA-binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057945376.1
TTATATAAAATATTTACTCGTTTTCTCTCTCTACTTTCAACGGGCAAGGTTTTTCGCAGCTCGGGTATTTTCTCTCTCTAAATTCAGAGATTTTTAGTTTTCTTAGGGCTTGGGAATCCGAGGAGCTAGTTTCTCAATTGGTGAGCTGTGATCAATCGAAGATTTATGCGAGGTTTTGATTTGTCTTCGTACGATGTTCTTGGCTACGGAGTTTTGTGCTGTGATTGGGGCTTTTAATTGTCGATTATCATTTGTTTATG...

XM_057945373.1
TATATAAAATATTTACTCGTTTTCTCTCTCTACTTTCAACGGGCAAGGTTTTTCGCAGCTCGGGTATTTTCTCTCTCTAAATTCAGAGATTTTTAGTTTTCTTAGGGCTTGGGAATCCGAGGAGCTAGTTTCTCAATTGGTGAGGAAGTTTAGGATTATGGAATTGTGATGAAGTATAGGGATTAATGGCAGAGGTAAAATTGGATGAATTTTGCCTTGAGAACAAGGAATCTGCTGTTGCTTCAAGCTCCTCTGTTTCG...

CDS

4 records

下载 CDS FASTA

LOC131016668
ATGGCAGAGGTAAAATTGGATGAATTTTGCCTTGAGAACAAGGAATCTGCTGTTGCTTCAAGCTCCTCTGTTTCGGAGAATAGTAGTAGCACCGCACTAAAGTCGCCTGGGGTAACTAGTCCAAGAAGTGTTTCTCCAGCCCATAGACGAACTACCGGCCCAATTAGAAGAGCAAAAGGAGGTTGGACTCCAGAGGAGGACGATACATTAAGAAAAGCTGTTGCAGCTTTTAGAGGGAAGTCTTGGAAGAAAATAGCTGA...

Protein

4 records

下载 Protein FASTA

XP_057801356.1
MAEVKLDEFCLENKESAVASSSSVSENSSSTALKSPGVTSPRSVSPAHRRTTGPIRRAKGGWTPEEDDTLRKAVAAFRGKSWKKIAEFFPHRSEVQCLHRWQKVLNPELVKGPWTPEEDEKITKLVAKYGPTKWSVIAKSLPGRIGKQCRERWHNHLNPDIKKDAWTLEEELTLLNAHRINGNKWAELAKLLPGRTDNAIKNHWNSSLKKKLDFYLATGSLPPVAKNVLLNGARDIGRSTLVGSPFLALCDTTDLCKVED...

XP_057801357.1
MAEVKLDEFCLENKESAVASSSSVSENSSSTALKSPGVTSPRSVSPAHRRTTGPIRRAKGGWTPEEDDTLRKAVAAFRGKSWKKIAEFFPHRSEVQCLHRWQKVLNPELVKGPWTPEEDEKITKLVAKYGPTKWSVIAKSLPGRIGKQCRERWHNHLNPDIKKDAWTLEEELTLLNAHRINGNKWAELAKLLPGRTDNAIKNHWNSSLKKKLDFYLATGSLPPVAKNVLLNGARDIGRSTLVGSPFLALCDTTDLCKVED...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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