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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G002563

染色体: Chr03 坐标: 40832043-40834936 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G002563
名称SmilChr03G002563
描述ankyrin repeat-containing protein At5g02620-like
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向40832043 - 40834936 / -

ID 对照

NCBI Gene IDLOC131016722
GeneID131016722
locus_tag-
NCBI NameLOC131016722
原始查询LOC131016722

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述ankyrin repeat-containing protein At5g02620-like
产物ankyrin repeat-containing protein At5g02620-like
ArabidopsisAT1G07710 (AT1G07710)
Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:837285]
identity=64.8; qcov=1; evalue=0; confidence=high
RiceOs03g0281100 (OsSTA96)
-
identity=60; qcov=1; evalue=0; confidence=high
GOGO:0005886 (plasma membrane); GO:0008157 (protein phosphatase 1 binding); GO:0019888 (protein phosphatase regulator activity); GO:0035304 (GO:0035304)
KEGG-
PfamPF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13962 (PGG)
InterPro-
eggNOG-
NRGeneID:131016722

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057801408.1
2 Nucleus 细胞核 0.00000 XP_057801408.1
3 Chromosome 染色体 0.00000 XP_057801408.1
4 Centromere 着丝粒 0.00000 XP_057801408.1
5 Chromatin 染色质 0.00000 XP_057801408.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:40832313 G A EMS_canonical_SNV CDS_variant 1 B127
Chr3:40832546 G A EMS_canonical_SNV CDS_variant 1 C60
Chr3:40832685 C T EMS_canonical_SNV CDS_variant 1 A15
Chr3:40832775 G A EMS_canonical_SNV CDS_variant 1 D10
Chr3:40832808 C T EMS_canonical_SNV CDS_variant 5 A13,B127,B130,C13,C87
Chr3:40832868 C T EMS_canonical_SNV CDS_variant 1 D10
Chr3:40833009 G A EMS_canonical_SNV CDS_variant 5 A16,B58,B77,B98,C31
Chr3:40833311 C T EMS_canonical_SNV CDS_variant 2 A7,B80
Chr3:40833452 G A EMS_canonical_SNV CDS_variant 1 B97
Chr3:40834087 C T EMS_canonical_SNV CDS_variant 1 B122
Chr3:40834160 G A EMS_canonical_SNV CDS_variant 4 B114,B25,B88,D3
Chr3:40834168 C T EMS_canonical_SNV CDS_variant 1 A2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801408.1
531 aa
N
1
266
531
Ank_2
Ank
Ank_4
Ank_2
Ank
Ank_4
Ank_2
Ank
Ank_3
Ank_4
Ank_2
Ank_2
PGG
C
PF12796 Ank_2 22-118 aa PF00023 Ank 59-83 aa PF13637 Ank_4 99-148 aa PF12796 Ank_2 125-184 aa PF00023 Ank 129-152 aa PF13637 Ank_4 132-180 aa PF12796 Ank_2 160-216 aa PF00023 Ank 161-183 aa PF13606 Ank_3 161-186 aa PF13637 Ank_4 166-216 aa PF12796 Ank_2 191-256 aa PF12796 Ank_2 223-288 aa PF13962 PGG 341-456 aa
XP_057801409.1
531 aa
N
1
266
531
Ank_2
Ank
Ank_4
Ank_2
Ank
Ank_4
Ank_2
Ank
Ank_3
Ank_4
Ank_2
Ank_2
PGG
C
PF12796 Ank_2 22-118 aa PF00023 Ank 59-83 aa PF13637 Ank_4 99-148 aa PF12796 Ank_2 125-184 aa PF00023 Ank 129-152 aa PF13637 Ank_4 132-180 aa PF12796 Ank_2 160-216 aa PF00023 Ank 161-183 aa PF13606 Ank_3 161-186 aa PF13637 Ank_4 166-216 aa PF12796 Ank_2 191-256 aa PF12796 Ank_2 223-288 aa PF13962 PGG 341-456 aa
XP_057801410.1
531 aa
N
1
266
531
Ank_2
Ank
Ank_4
Ank_2
Ank
Ank_4
Ank_2
Ank
Ank_3
Ank_4
Ank_2
Ank_2
PGG
C
PF12796 Ank_2 22-118 aa PF00023 Ank 59-83 aa PF13637 Ank_4 99-148 aa PF12796 Ank_2 125-184 aa PF00023 Ank 129-152 aa PF13637 Ank_4 132-180 aa PF12796 Ank_2 160-216 aa PF00023 Ank 161-183 aa PF13606 Ank_3 161-186 aa PF13637 Ank_4 166-216 aa PF12796 Ank_2 191-256 aa PF12796 Ank_2 223-288 aa PF13962 PGG 341-456 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057801408.1 Pfam PF12796 Ank_2 Repeat 22 118 6.6e-46 155.5 Ankyrin repeats (3 copies)
XP_057801408.1 Pfam PF00023 Ank Repeat 59 83 2.8e-36 122.2 Ankyrin repeat
XP_057801408.1 Pfam PF13637 Ank_4 Repeat 99 148 1.4e-30 105.4 Ankyrin repeats (many copies)
XP_057801408.1 Pfam PF12796 Ank_2 Repeat 125 184 6.6e-46 155.5 Ankyrin repeats (3 copies)
XP_057801408.1 Pfam PF00023 Ank Repeat 129 152 2.8e-36 122.2 Ankyrin repeat
XP_057801408.1 Pfam PF13637 Ank_4 Repeat 132 180 1.4e-30 105.4 Ankyrin repeats (many copies)
XP_057801408.1 Pfam PF12796 Ank_2 Repeat 160 216 6.6e-46 155.5 Ankyrin repeats (3 copies)
XP_057801408.1 Pfam PF00023 Ank Repeat 161 183 2.8e-36 122.2 Ankyrin repeat
XP_057801408.1 Pfam PF13606 Ank_3 Repeat 161 186 5.1e-33 109.7 Ankyrin repeat
XP_057801408.1 Pfam PF13637 Ank_4 Repeat 166 216 1.4e-30 105.4 Ankyrin repeats (many copies)
XP_057801408.1 Pfam PF12796 Ank_2 Repeat 191 256 6.6e-46 155.5 Ankyrin repeats (3 copies)
XP_057801408.1 Pfam PF12796 Ank_2 Repeat 223 288 6.6e-46 155.5 Ankyrin repeats (3 copies)
XP_057801408.1 Pfam PF13962 PGG Domain 341 456 1.8e-28 99.4 Domain of unknown function
XP_057801409.1 Pfam PF12796 Ank_2 Repeat 22 118 6.6e-46 155.5 Ankyrin repeats (3 copies)
XP_057801409.1 Pfam PF00023 Ank Repeat 59 83 2.8e-36 122.2 Ankyrin repeat
XP_057801409.1 Pfam PF13637 Ank_4 Repeat 99 148 1.4e-30 105.4 Ankyrin repeats (many copies)
XP_057801409.1 Pfam PF12796 Ank_2 Repeat 125 184 6.6e-46 155.5 Ankyrin repeats (3 copies)
XP_057801409.1 Pfam PF00023 Ank Repeat 129 152 2.8e-36 122.2 Ankyrin repeat
XP_057801409.1 Pfam PF13637 Ank_4 Repeat 132 180 1.4e-30 105.4 Ankyrin repeats (many copies)
XP_057801409.1 Pfam PF12796 Ank_2 Repeat 160 216 6.6e-46 155.5 Ankyrin repeats (3 copies)
XP_057801409.1 Pfam PF00023 Ank Repeat 161 183 2.8e-36 122.2 Ankyrin repeat
XP_057801409.1 Pfam PF13606 Ank_3 Repeat 161 186 5.1e-33 109.7 Ankyrin repeat
XP_057801409.1 Pfam PF13637 Ank_4 Repeat 166 216 1.4e-30 105.4 Ankyrin repeats (many copies)
XP_057801409.1 Pfam PF12796 Ank_2 Repeat 191 256 6.6e-46 155.5 Ankyrin repeats (3 copies)
XP_057801409.1 Pfam PF12796 Ank_2 Repeat 223 288 6.6e-46 155.5 Ankyrin repeats (3 copies)
XP_057801409.1 Pfam PF13962 PGG Domain 341 456 1.8e-28 99.4 Domain of unknown function
XP_057801410.1 Pfam PF12796 Ank_2 Repeat 22 118 6.6e-46 155.5 Ankyrin repeats (3 copies)
XP_057801410.1 Pfam PF00023 Ank Repeat 59 83 2.8e-36 122.2 Ankyrin repeat
XP_057801410.1 Pfam PF13637 Ank_4 Repeat 99 148 1.4e-30 105.4 Ankyrin repeats (many copies)
XP_057801410.1 Pfam PF12796 Ank_2 Repeat 125 184 6.6e-46 155.5 Ankyrin repeats (3 copies)
XP_057801410.1 Pfam PF00023 Ank Repeat 129 152 2.8e-36 122.2 Ankyrin repeat
XP_057801410.1 Pfam PF13637 Ank_4 Repeat 132 180 1.4e-30 105.4 Ankyrin repeats (many copies)
XP_057801410.1 Pfam PF12796 Ank_2 Repeat 160 216 6.6e-46 155.5 Ankyrin repeats (3 copies)
XP_057801410.1 Pfam PF00023 Ank Repeat 161 183 2.8e-36 122.2 Ankyrin repeat
XP_057801410.1 Pfam PF13606 Ank_3 Repeat 161 186 5.1e-33 109.7 Ankyrin repeat
XP_057801410.1 Pfam PF13637 Ank_4 Repeat 166 216 1.4e-30 105.4 Ankyrin repeats (many copies)
XP_057801410.1 Pfam PF12796 Ank_2 Repeat 191 256 6.6e-46 155.5 Ankyrin repeats (3 copies)
XP_057801410.1 Pfam PF12796 Ank_2 Repeat 223 288 6.6e-46 155.5 Ankyrin repeats (3 copies)
XP_057801410.1 Pfam PF13962 PGG Domain 341 456 1.8e-28 99.4 Domain of unknown function

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057945426.1
TAAGGTTGTTTCAGTTTTTTCTCCTTTTTCTAATAACAGGAATAATAGGGCTGCAAAGGCTTTTTTTTTTTGAATAAAACAAAGAAGCATCAACCCATGTGTTGGCTTTTTGTTGCCACTCATTTTGTGACACTGTTACTTCAACTGTCTATCTCATGTATTTCTGTATCATTTTCTCTCTCTCTTCCCAAAACCTTATCCCAGAGCGAGTGAATTCTTGATATTACAGATGCAGAGTTGATCATTTTTGTGAGGTTTGA...
XM_057945427.1
TTTTTTGAATAAAACAAAGAAGCATCAACCCATGTGTTGGCTTTTTGTTGCCACTCATTTTGTGACACTGTTACTTCAACTGTCTATCTCATGTATTTCTGTATCATTTTCTCTCTCTCTTCCCAAAACCTTATCCCAGAGCGAGTGAATTCTTGATATTACAGAATATTTTTTGAACAGAGCAAATGATTAATGAGTGCTGAGTTGGAGCGTTACTGATAATGTGAATACTATAGAAATCAAATCAGATAAAAATACAC...

CDS

3 records

下载 CDS FASTA
LOC131016722
ATGGAAGCTAAGCCGCAGAAGCAGATAAAGAAGCAGCTAACGGGGAAAAGGGATGATTCAGCTCTGCATTCAGCTGCGAGAGAAGGGAATTTGGAGGTGGTGGTTGAGATCATCAATGGCTGCGGCGGCGGAGGAGAGGAGCTCATTGAGCTGCTGTCGAAGCAGAACCAGTCCGGCGAAACCGCCCTTTACGCAGCGGCGGAGTGCGGCCACGTTGAGCTGGTTGAGGAGATGATCAAGCACTATGATGTTGGCTTTGC...
LOC131016722
ATGGAAGCTAAGCCGCAGAAGCAGATAAAGAAGCAGCTAACGGGGAAAAGGGATGATTCAGCTCTGCATTCAGCTGCGAGAGAAGGGAATTTGGAGGTGGTGGTTGAGATCATCAATGGCTGCGGCGGCGGAGGAGAGGAGCTCATTGAGCTGCTGTCGAAGCAGAACCAGTCCGGCGAAACCGCCCTTTACGCAGCGGCGGAGTGCGGCCACGTTGAGCTGGTTGAGGAGATGATCAAGCACTATGATGTTGGCTTTGC...

Protein

3 records

下载 Protein FASTA
XP_057801408.1
MEAKPQKQIKKQLTGKRDDSALHSAAREGNLEVVVEIINGCGGGGEELIELLSKQNQSGETALYAAAECGHVELVEEMIKHYDVGFAALKAKNGFDAFHIAAKMGKLGVLKALMEADPELLATVDQSNTTALHTAAAQGHVEVVSFLLERNSSLATIARNNGKTALHSSARYGHLEVVKAILRKEPGIATWQDKKGQTALHMAVKGTSTHVVDDLIAADSALLTMQDAKANTALHIATRKARPQILEALLKHKELNKEAI...
XP_057801409.1
MEAKPQKQIKKQLTGKRDDSALHSAAREGNLEVVVEIINGCGGGGEELIELLSKQNQSGETALYAAAECGHVELVEEMIKHYDVGFAALKAKNGFDAFHIAAKMGKLGVLKALMEADPELLATVDQSNTTALHTAAAQGHVEVVSFLLERNSSLATIARNNGKTALHSSARYGHLEVVKAILRKEPGIATWQDKKGQTALHMAVKGTSTHVVDDLIAADSALLTMQDAKANTALHIATRKARPQILEALLKHKELNKEAI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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