当前解析结果
SmilChr03G000121| 统一新 Gene ID | SmilChr03G000121 |
|---|---|
| 名称 | SmilChr03G000121 |
| 描述 | putative late blight resistance protein homolog R1A-3 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 1308646 - 1313469 / + |
| NCBI Gene ID | LOC131016793 |
|---|---|
| GeneID | 131016793 |
| locus_tag | - |
| NCBI Name | LOC131016793 |
| 原始查询 | LOC131016793 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1A-3 |
| 产物 | putative late blight resistance protein homolog R1A-3 |
| Arabidopsis | AT1G50180 (AT1G50180)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:841440] identity=32.7; qcov=0.505; evalue=7.06e-68; confidence=low |
| Rice | Os07g0186500- identity=32.3; qcov=0.531; evalue=3.89e-73; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016793 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057801509.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057801509.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057801509.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057801509.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057801509.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:1309980 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B41 |
Chr3:1310124 |
CG |
C |
1bp_deletion | frameshift_variant | 17 | A11,B102,B114,B129,B16,B33,B70,B83,B90,B92,B97,C16,C3,C59,C74,D2,D9 |
Chr3:1310126 |
ATG |
A |
2bp_deletion | frameshift_variant | 17 | A11,B102,B114,B129,B16,B33,B70,B83,B90,B92,B97,C16,C3,C59,C74,D2,D9 |
Chr3:1310137 |
C |
CTG |
2bp_insertion | frameshift_variant | 33 | A16,A21,A24,A9,B107,B133,B18,B26,B3,B4,B40,B46,B55,B56,B63,B74,B83,B86,B95,B96,B97,C11,C12,C18,C2,C31,C39,C51,C61,C65,C87,D11,D7 |
Chr3:1310139 |
AGG |
A |
2bp_deletion | frameshift_variant | 33 | A16,A21,A24,A9,B107,B133,B18,B26,B3,B4,B40,B46,B55,B56,B63,B74,B83,B86,B95,B96,B97,C11,C12,C18,C2,C31,C39,C51,C61,C65,C87,D11,D7 |
Chr3:1310232 |
AT |
A |
1bp_deletion | frameshift_variant | 1 | B28 |
Chr3:1310232 |
AT |
A |
1bp_deletion | CDS_variant | 1 | B28 |
Chr3:1310260 |
A |
AG |
1bp_insertion | frameshift_variant | 1 | B107 |
Chr3:1310260 |
A |
AG |
1bp_insertion | CDS_variant | 1 | B107 |
Chr3:1310278 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C75 |
Chr3:1310287 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B10,B128,B47,C75,D6 |
Chr3:1310344 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A21,C33,C68 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057801509.1PF00931
NB-ARC 302-469 aa
PF23559
WHD_DRP 553-624 aa
PF23598
LRR_14 685-946 aa
XP_057801510.1PF00931
NB-ARC 302-469 aa
PF23559
WHD_DRP 553-624 aa
PF23598
LRR_14 685-946 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057801509.1 |
Pfam | PF00931 |
NB-ARC | Domain | 302 | 469 | 3.2e-40 | 138.3 | NB-ARC domain |
XP_057801509.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 553 | 624 | 2e-19 | 70.1 | Disease resistance protein Winged helix domain |
XP_057801509.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 685 | 946 | 3.4e-16 | 59.7 | Leucine-rich repeat region |
XP_057801510.1 |
Pfam | PF00931 |
NB-ARC | Domain | 302 | 469 | 3.2e-40 | 138.3 | NB-ARC domain |
XP_057801510.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 553 | 624 | 2e-19 | 70.1 | Disease resistance protein Winged helix domain |
XP_057801510.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 685 | 946 | 3.4e-16 | 59.7 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。