当前解析结果
SmilChr03G000305| 统一新 Gene ID | SmilChr03G000305 |
|---|---|
| 名称 | SmilChr03G000305 |
| 描述 | putative disease resistance protein At1g50180 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 3475239 - 3480731 / - |
| NCBI Gene ID | LOC131016803 |
|---|---|
| GeneID | 131016803 |
| locus_tag | - |
| NCBI Name | LOC131016803 |
| 原始查询 | LOC131016803 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative disease resistance protein At1g50180 |
| 产物 | putative disease resistance protein At1g50180 |
| Arabidopsis | AT5G43470 (RPP8)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:834367] identity=32.7; qcov=1.03; evalue=4.63e-127; confidence=low |
| Rice | Os07g0186500- identity=29.7; qcov=1; evalue=1.69e-83; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF13191 (AAA_16); PF13401 (AAA_22); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016803 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057801527.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057801527.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057801527.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057801527.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057801527.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:3475271 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr3:3475308 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B108,B80 |
Chr3:3475315 |
C |
CG |
1bp_insertion | frameshift_variant | 5 | B30,B72,B83,B94,C26 |
Chr3:3475315 |
C |
CG |
1bp_insertion | CDS_variant | 5 | B30,B72,B83,B94,C26 |
Chr3:3475317 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr3:3475379 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B100,C13,C59 |
Chr3:3475381 |
AT |
A |
1bp_deletion | frameshift_variant | 2 | C31,C78 |
Chr3:3475381 |
AT |
A |
1bp_deletion | CDS_variant | 2 | C31,C78 |
Chr3:3475385 |
T |
TA |
1bp_insertion | frameshift_variant | 2 | C31,C78 |
Chr3:3475385 |
T |
TA |
1bp_insertion | CDS_variant | 2 | C31,C78 |
Chr3:3475396 |
GA |
G |
1bp_deletion | frameshift_variant | 3 | B100,C13,C59 |
Chr3:3475396 |
GA |
G |
1bp_deletion | CDS_variant | 3 | B100,C13,C59 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057801527.1PF18052
Rx_N 5-87 aa
PF13191
AAA_16 170-282 aa
PF00931
NB-ARC 174-342 aa
PF13401
AAA_22 189-293 aa
PF23559
WHD_DRP 429-506 aa
PF23598
LRR_14 568-877 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057801527.1 |
Pfam | PF18052 |
Rx_N | Domain | 5 | 87 | 4e-18 | 66.0 | Rx N-terminal domain |
XP_057801527.1 |
Pfam | PF13191 |
AAA_16 | Domain | 170 | 282 | 1e-08 | 36.6 | AAA ATPase domain |
XP_057801527.1 |
Pfam | PF00931 |
NB-ARC | Domain | 174 | 342 | 9.7e-38 | 130.2 | NB-ARC domain |
XP_057801527.1 |
Pfam | PF13401 |
AAA_22 | Domain | 189 | 293 | 3.4e-07 | 31.4 | AAA domain |
XP_057801527.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 429 | 506 | 1.3e-12 | 48.2 | Disease resistance protein Winged helix domain |
XP_057801527.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 568 | 877 | 5.4e-27 | 95.2 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。