Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000213`

染色体: Chr03 坐标: 2477975-2485676 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000213`
名称	SmilChr03G000213
描述	putative late blight resistance protein homolog R1A-3
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	2477975 - 2485676 / `+`

ID 对照

NCBI Gene ID	`LOC131016804`
GeneID	`131016804`
locus_tag	`-`
NCBI Name	`LOC131016804`
原始查询	`LOC131016804`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative late blight resistance protein homolog R1A-3
产物	putative late blight resistance protein homolog R1A-3
Arabidopsis	`AT3G46530` (RPP13) NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:823806] identity=29.4; qcov=0.743; evalue=2.45e-65; confidence=low
Rice	`Os08g0424700` (P0456B03.103) - identity=27; qcov=0.856; evalue=4.24e-64; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131016804

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.60000	`XP_057801528.1`
2	Cytoplasm	细胞质	0.40000	`XP_057801528.1`
3	Cell membrane	细胞膜	0.20000	`XP_057801528.1`
4	Nucleus	细胞核	0.00000	`XP_057801528.1`
5	Chromosome	染色体	0.00000	`XP_057801528.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:2478410`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr3:2478427`	`GCC`	`G`	2bp_deletion	frameshift_variant	1	D5
`Chr3:2478427`	`GCC`	`G`	2bp_deletion	CDS_variant	1	D5
`Chr3:2478443`	`A`	`AAT`	2bp_insertion	frameshift_variant	1	D5
`Chr3:2478443`	`A`	`AAT`	2bp_insertion	CDS_variant	1	D5
`Chr3:2478445`	`C`	`CA`	1bp_insertion	frameshift_variant	1	D5
`Chr3:2478445`	`C`	`CA`	1bp_insertion	CDS_variant	1	D5
`Chr3:2478518`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B107,B122,C47
`Chr3:2479601`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B65,B75,C20,C6
`Chr3:2479634`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A21
`Chr3:2479683`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B89
`Chr3:2479695`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	C15,C4,C52,D1

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801528.1

914 aa

457

914

NB-ARC

WHD_DRP

LRR_14

PF00931 NB-ARC 221-387 aa PF23559 WHD_DRP 465-534 aa PF23598 LRR_14 606-789 aa

XP_057801529.1

914 aa

457

914

NB-ARC

WHD_DRP

LRR_14

PF00931 NB-ARC 221-387 aa PF23559 WHD_DRP 465-534 aa PF23598 LRR_14 606-789 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801528.1`	Pfam	`PF00931`	NB-ARC	Domain	221	387	8.4e-39	133.6	NB-ARC domain
`XP_057801528.1`	Pfam	`PF23559`	WHD_DRP	Domain	465	534	2.4e-18	66.7	Disease resistance protein Winged helix domain
`XP_057801528.1`	Pfam	`PF23598`	LRR_14	Repeat	606	789	8e-16	58.5	Leucine-rich repeat region
`XP_057801529.1`	Pfam	`PF00931`	NB-ARC	Domain	221	387	8.4e-39	133.6	NB-ARC domain
`XP_057801529.1`	Pfam	`PF23559`	WHD_DRP	Domain	465	534	2.4e-18	66.7	Disease resistance protein Winged helix domain
`XP_057801529.1`	Pfam	`PF23598`	LRR_14	Repeat	606	789	8e-16	58.5	Leucine-rich repeat region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057945546.1
AAAGAAGAAGTAAAAAACACGTGATGTTCATGTACAAGGTGAAATGCAGTGCATTACATAAAAGCAAAACAAAAATTTAGCCATGTCCCCTTGCTTTGATATATGTTCTTATGTCTGACCAAATTAAGCAAAGACAAAACTCGAGTCAATTAAACCCAAGTCAGTCCTTTGAATCGATCAGGTCGAATCTTTTTCATAGTAGCTATTTTCGCAACCTATCAAGCCAATCGAGCTGGGCCCTTTTCCGTAATAGAAAATTT...

XM_057945545.1
TAAAAAACACGTGATGTTCATGTACAAGGTGAAATGCAGTGCATTACATAAAAGCAAAACAAAAATTTAGCCATGTCCCCTTGCTTTGATATATGTTCTTATGTCTGACCAAATTAAGCAAAGACAAAACTCGAGTCAATTAAACCCAAGTCAGTCCTTTGAATCGATCAGGTCGAATCTTTTTCATAGTAGCTATTTTCGCAACCTATCAAGCCAATCGAGCTGGGCCCTTTTCCGTAATAGAAAATTTCCCTTTAACA...

CDS

2 records

下载 CDS FASTA

LOC131016804
ATGGCGGACGCATCCAAGGCGTTTTTGGAGAATGCACTCCAGGAGCTAATGCTTAACCAGTCGGAGATCGAGGGCCCATTGAGTGGCCAGATCCAGGAGCAATCAGGTCGAGATCACACCAAGGCTCGCGACGTCCAGATCGAGGACGAGGAGAAGTTTCTCACCGAATTCGAAGACTCGTATCACACCGAGGCTCGCGACGTAGTTATCGATCATCAGACAGTTGGTGGGTGCCGGCGGTGGCGATGCAGGCAGCGGCG...

Protein

2 records

下载 Protein FASTA

XP_057801528.1
MADASKAFLENALQELMLNQSEIEGPLSGQIQEQSGRDHTKARDVQIEDEEKFLTEFEDSYHTEARDVVIDHQTVGGCRRWRCRQRRLKAQDLDTRRWREIGCERRRANWSTRDVVYEVKAKEEKANSTNLLPLLQVFEMVMQSTRDVVYELKAKEKKFNSTNPLPPTTTLLENQELMQSTAGAVDCIKSNQLSDSSTAVGSSSRRELTSKYDVVGIQRDLSKIKRLLTCPPSKLQVLPIVGMGGIGKTTLVKLVYSDKL...

XP_057801529.1
MADASKAFLENALQELMLNQSEIEGPLSGQIQEQSGRDHTKARDVQIEDEEKFLTEFEDSYHTEARDVVIDHQTVGGCRRWRCRQRRLKAQDLDTRRWREIGCERRRANWSTRDVVYEVKAKEEKANSTNLLPLLQVFEMVMQSTRDVVYELKAKEKKFNSTNPLPPTTTLLENQELMQSTAGAVDCIKSNQLSDSSTAVGSSSRRELTSKYDVVGIQRDLSKIKRLLTCPPSKLQVLPIVGMGGIGKTTLVKLVYSDKL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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