Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000260`

染色体: Chr03 坐标: 3038683-3042201 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000260`
名称	SmilChr03G000260
描述	putative late blight resistance protein homolog R1C-3
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	3038683 - 3042201 / `-`

ID 对照

NCBI Gene ID	`LOC131016812`
GeneID	`131016812`
locus_tag	`-`
NCBI Name	`LOC131016812`
原始查询	`LOC131016812`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative late blight resistance protein homolog R1C-3
产物	putative late blight resistance protein homolog R1C-3
Arabidopsis	`AT1G53350` (AT1G53350) Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:841771] identity=29.1; qcov=1.02; evalue=7.17e-70; confidence=low
Rice	`Os07g0186500` - identity=30.8; qcov=0.926; evalue=1.03e-78; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131016812

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057801539.1`
2	Cytoplasm	细胞质	0.20000	`XP_057801539.1`
3	Cytosol	细胞质基质	0.20000	`XP_057801541.1`
4	Nucleus	细胞核	0.00000	`XP_057801541.1`
5	Chromosome	染色体	0.00000	`XP_057801541.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:3038880`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	D10,D3
`Chr3:3038908`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B109,B112,B29,D9
`Chr3:3039007`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B114
`Chr3:3039008`	`CA`	`C`	1bp_deletion	frameshift_variant	1	B65
`Chr3:3039008`	`CA`	`C`	1bp_deletion	CDS_variant	1	B65
`Chr3:3039013`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr3:3039073`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A1,B100,B7
`Chr3:3039107`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr3:3039130`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C13
`Chr3:3039140`	`TC`	`T`	1bp_deletion	frameshift_variant	1	A13
`Chr3:3039140`	`TC`	`T`	1bp_deletion	CDS_variant	1	A13
`Chr3:3039149`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A21,B100,B7,C13,C72

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801539.1

892 aa

446

892

NB-ARC

WHD_DRP

LRR_14

PF00931 NB-ARC 180-342 aa PF23559 WHD_DRP 429-498 aa PF23598 LRR_14 551-820 aa

XP_057801540.1

829 aa

414

829

NB-ARC

WHD_DRP

LRR_14

PF00931 NB-ARC 117-279 aa PF23559 WHD_DRP 366-435 aa PF23598 LRR_14 488-686 aa

XP_057801541.1

760 aa

380

760

NB-ARC

WHD_DRP

LRR_14

PF00931 NB-ARC 48-210 aa PF23559 WHD_DRP 297-366 aa PF23598 LRR_14 419-617 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801539.1`	Pfam	`PF00931`	NB-ARC	Domain	180	342	3.3e-39	134.9	NB-ARC domain
`XP_057801539.1`	Pfam	`PF23559`	WHD_DRP	Domain	429	498	1.2e-17	64.4	Disease resistance protein Winged helix domain
`XP_057801539.1`	Pfam	`PF23598`	LRR_14	Repeat	551	820	5.9e-23	81.9	Leucine-rich repeat region
`XP_057801540.1`	Pfam	`PF00931`	NB-ARC	Domain	117	279	2.9e-39	135.1	NB-ARC domain
`XP_057801540.1`	Pfam	`PF23559`	WHD_DRP	Domain	366	435	1e-17	64.6	Disease resistance protein Winged helix domain
`XP_057801540.1`	Pfam	`PF23598`	LRR_14	Repeat	488	686	4.7e-23	82.2	Leucine-rich repeat region
`XP_057801541.1`	Pfam	`PF00931`	NB-ARC	Domain	48	210	2.6e-39	135.3	NB-ARC domain
`XP_057801541.1`	Pfam	`PF23559`	WHD_DRP	Domain	297	366	8.8e-18	64.8	Disease resistance protein Winged helix domain
`XP_057801541.1`	Pfam	`PF23598`	LRR_14	Repeat	419	617	3.6e-23	82.6	Leucine-rich repeat region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057945557.1
TCAAAAAGAACTTCATCATTATGTGAGCTGCTCGAACTAAAAATCAAAATATGAATTTCTTGAAAGTTATAAGTCCCCTGTTGCCGACGGAGATGAAGCTGATCCGCTGGAGATGCGTATCGCAGATGCAGCTCATGCTGTTGAAGATGTTATCGAATCACATATTGTGAACGTGATTAAACTGGGTAGATCTAGTTCCAACGAAATATTTCTCCAAGGCTATGTTGTAGATGCAGCTCATGCGGCTGAAGAAGTGAATT...

XM_057945556.1
CGCATACTTAAATGACGTCAAGGACACATTGTTTGTGATAATAATTGAGGAGATATAGCCATTTTACACATTGTTTTTGCTGAACCTAAACTCAGATTCTATTAAATTCTTTCTCAGAAAAATATACAGTGTTTTTCCTTGGATCATGGCGGCATATGCAGCCTTGGTTTCTCTTATGCATATCATCGATACAATCGAACATCACCCTTCCCCTCCAATTTCTATCGACAAACAACAAGTTGAATCTCTCACTCAAATTG...

CDS

3 records

下载 CDS FASTA

LOC131016812
ATGGCGGCATATGCAGCCTTGGTTTCTCTTATGCATATCATCGATACAATCGAACATCACCCTTCCCCTCCAATTTCTATCGACAAACAACAAGTTGAATCTCTCACTCAAATTGTTACCTTTTTGCAGGAATTTCTTGAAAGTTATAAGTCCCCTGTTGCCGACGGAGATGAAGCTGATCCGCTGGAGATGCGTATCGCAGATGCAGCTCATGCTGTTGAAGATGTTATCGAATCACATATTGTGAACGTGATTAAACT...

LOC131016812
ATGCGTATCGCAGATGCAGCTCATGCTGTTGAAGATGTTATCGAATCACATATTGTGAACGTGATTAAACTGGGTAGATCTAGTTCCAACGAAATATTTCTCCAAGGCTATGTTGTAGATGCAGCTCATGCGGCTGAAGAAGTGAATTCTGGAGAGAAAGTCAGTTGCATCGACTTCTATGAAGATCTACAGCAAGTGATAGAAGAAATGAATGTGATCAAGAAGGAAGCCATGGAAACTTCAGCTGAAGCTCAGCTGAA...

Protein

3 records

下载 Protein FASTA

XP_057801539.1
MAAYAALVSLMHIIDTIEHHPSPPISIDKQQVESLTQIVTFLQEFLESYKSPVADGDEADPLEMRIADAAHAVEDVIESHIVNVIKLGRSSSNEIFLQGYVVDAAHAAEEVNSGEKVSCIDFYEDLQQVIEEMNVIKKEAMETSAEAQLKRKVSPTHAGSLTSSSNVKESKMVGFDDVLLQLLDRLTGGNRNRQIIPITGMGGIGKTTLARHIFEHALVKEHFDIRAWTTISQTYNVREALREVLHQVSGDLGSDLSENE...

XP_057801540.1
MRIADAAHAVEDVIESHIVNVIKLGRSSSNEIFLQGYVVDAAHAAEEVNSGEKVSCIDFYEDLQQVIEEMNVIKKEAMETSAEAQLKRKVSPTHAGSLTSSSNVKESKMVGFDDVLLQLLDRLTGGNRNRQIIPITGMGGIGKTTLARHIFEHALVKEHFDIRAWTTISQTYNVREALREVLHQVSGDLGSDLSENELGEKLYKYLYGRRYIIILDDMWSVEVWDKMRFFFSDYNDGSRVIVTTRLSNLAAELTNSNSIS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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