Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000259`

染色体: Chr03 坐标: 3027048-3030071 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000259`
名称	SmilChr03G000259
描述	putative late blight resistance protein homolog R1C-3
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	3027048 - 3030071 / `-`

ID 对照

NCBI Gene ID	`LOC131016814`
GeneID	`131016814`
locus_tag	`-`
NCBI Name	`LOC131016814`
原始查询	`LOC131016814`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative late blight resistance protein homolog R1C-3
产物	putative late blight resistance protein homolog R1C-3
Arabidopsis	`AT1G59780` (AT1G59780) NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:842271] identity=27.6; qcov=0.999; evalue=2.56e-60; confidence=low
Rice	`Os07g0186500` - identity=31.3; qcov=0.923; evalue=1.59e-81; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF13401 (AAA_22); PF23559 (WHD_DRP); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131016814

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057801546.1`
2	Cytoplasm	细胞质	0.20000	`XP_057801546.1`
3	Cytosol	细胞质基质	0.20000	`XP_057801547.1`
4	Nucleus	细胞核	0.00000	`XP_057801547.1`
5	Chromosome	染色体	0.00000	`XP_057801547.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:3027278`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B134,B70,C37,C79,D9
`Chr3:3027334`	`GAC`	`G`	2bp_deletion	frameshift_variant	3	B103,C10,C23
`Chr3:3027334`	`GAC`	`G`	2bp_deletion	CDS_variant	3	B103,C10,C23
`Chr3:3027346`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr3:3027419`	`AT`	`*`	1bp_deletion	CDS_variant	4	B119,B126,B43,B6
`Chr3:3027420`	`T`	`TG`	1bp_insertion	frameshift_variant	7	B103,B26,B29,B52,B87,C10,C55
`Chr3:3027422`	`C`	`CTG`	2bp_insertion	frameshift_variant	7	B103,B26,B29,B52,B87,C10,C55
`Chr3:3027466`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B134
`Chr3:3027526`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B29,C87
`Chr3:3027548`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A13,B29,C47,C87
`Chr3:3027549`	`C`	`T`	EMS_canonical_SNV	stop_gained	2	A15,B133
`Chr3:3027549`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A15,B133

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801546.1

890 aa

445

890

NB-ARC

AAA_22

WHD_DRP

LRR_14

PF00931 NB-ARC 181-343 aa PF13401 AAA_22 192-282 aa PF23559 WHD_DRP 429-499 aa PF23598 LRR_14 561-839 aa

XP_057801547.1

758 aa

379

758

NB-ARC

AAA_22

WHD_DRP

LRR_14

PF00931 NB-ARC 49-211 aa PF13401 AAA_22 60-150 aa PF23559 WHD_DRP 297-367 aa PF23598 LRR_14 429-707 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801546.1`	Pfam	`PF00931`	NB-ARC	Domain	181	343	6.1e-39	134.1	NB-ARC domain
`XP_057801546.1`	Pfam	`PF13401`	AAA_22	Domain	192	282	5.7e-07	30.6	AAA domain
`XP_057801546.1`	Pfam	`PF23559`	WHD_DRP	Domain	429	499	4.5e-14	53.0	Disease resistance protein Winged helix domain
`XP_057801546.1`	Pfam	`PF23598`	LRR_14	Repeat	561	839	5e-18	65.7	Leucine-rich repeat region
`XP_057801547.1`	Pfam	`PF00931`	NB-ARC	Domain	49	211	4.8e-39	134.4	NB-ARC domain
`XP_057801547.1`	Pfam	`PF13401`	AAA_22	Domain	60	150	9.9e-07	29.9	AAA domain
`XP_057801547.1`	Pfam	`PF23559`	WHD_DRP	Domain	297	367	3e-14	53.5	Disease resistance protein Winged helix domain
`XP_057801547.1`	Pfam	`PF23598`	LRR_14	Repeat	429	707	3.3e-18	66.3	Leucine-rich repeat region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057945564.1
TTGCAGGAATTTCTTGAAAGTTATAAGTCCCCTGTTGCTGACGGAGATGAAGCCGATCCGCTGGAGATGCGTATTGTAGATGCAGCTCATGCCGTTGAAGATGTTATCGAATCACATATTGTGAACGTGATTGAACTGGGAATTTCTCCAAGGCTATGTTGTAGATGCAGCTCATGCGGCTGAAGAAGTGAATTCTAGAGAGGAAGTCAGTTGCATCGACTTCTATGAAGATCTACAGCAAGTGATAGAAGAAATGAATG...

XM_057945563.1
TGATAATAATTGAGGAGATATAGCCATTTTACACATTGTTTTTGCTGAAGCTATTCCATCAAATTCTTGTCCGAAATTCTCAGAAAAATATACACTGTTTTTCCTCGGATCATGGCGGCATATGCAGCCTTGGTTTCTCTTATGCATATCATCGATACAATCGAGCATCACCCTTCCCCTCCGATTTCTATAGACAAACAACAAGTTGAATCTCTCACTCAAATTGTTACCTTTTTGCAGGAATTTCTTGAAAGTTATAA...

CDS

2 records

下载 CDS FASTA

LOC131016814
ATGGCGGCATATGCAGCCTTGGTTTCTCTTATGCATATCATCGATACAATCGAGCATCACCCTTCCCCTCCGATTTCTATAGACAAACAACAAGTTGAATCTCTCACTCAAATTGTTACCTTTTTGCAGGAATTTCTTGAAAGTTATAAGTCCCCTGTTGCTGACGGAGATGAAGCCGATCCGCTGGAGATGCGTATTGTAGATGCAGCTCATGCCGTTGAAGATGTTATCGAATCACATATTGTGAACGTGATTGAACT...

LOC131016814
ATGAATGTGATCAAGAAGGAAGCCATGGAGACTTCAGCTGAAGCTCAGCTGCAGAGAAAGGTCTCCTCGACTCATGCTGGCTCCTTGACGTCCTCTTCCACTGTGAAGGAAAGCAAGATGGTGGGGTTTGATGACGTGCAACTTCAACTCTTGGATTGGCTCACTGGAGGGAACCGTAACCGCCAAATCATCCCAATCACAGGGATGGGCGGGATTGGTAAGACCACTCTTGCCCGACATATATTTGAGCATGCCCTTGT...

Protein

2 records

下载 Protein FASTA

XP_057801546.1
MAAYAALVSLMHIIDTIEHHPSPPISIDKQQVESLTQIVTFLQEFLESYKSPVADGDEADPLEMRIVDAAHAVEDVIESHIVNVIELGRSSPNEEFLQGYVVDAAHAAEEVNSREEVSCIDFYEDLQQVIEEMNVIKKEAMETSAEAQLQRKVSSTHAGSLTSSSTVKESKMVGFDDVQLQLLDWLTGGNRNRQIIPITGMGGIGKTTLARHIFEHALVKEHFDIRAWTTISQTYNVRETLRQVLHQVSGDLRSDLSEED...

XP_057801547.1
MNVIKKEAMETSAEAQLQRKVSSTHAGSLTSSSTVKESKMVGFDDVQLQLLDWLTGGNRNRQIIPITGMGGIGKTTLARHIFEHALVKEHFDIRAWTTISQTYNVRETLRQVLHQVSGDLRSDLSEEDLGVKLRKYLLSRSKYLIILDDMWSVEVWEKMMVFFPDKNDGSRIVVTTRLSNLATELTNSNSIGMRFLDDICSWSLFSKTVFGDEGFPLHLEEIGKKIVGKCKGLPLSIVVIGGLLAKSELTLEYWEHIEEN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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