Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001300`

染色体: Chr01 坐标: 25904615-25910368 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001300`
名称	SmilChr01G001300
描述	hydroxymethylglutaryl-CoA lyase, mitochondrial
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	25904615 - 25910368 / `+`

ID 对照

NCBI Gene ID	`LOC131016840`
GeneID	`131016840`
locus_tag	`-`
NCBI Name	`LOC131016840`
原始查询	`LOC131016840`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hydroxymethylglutaryl-CoA lyase, mitochondrial
产物	hydroxymethylglutaryl-CoA lyase%2C mitochondrial
Arabidopsis	`AT2G26800` (AT2G26800) Aldolase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:817221] identity=68.8; qcov=1; evalue=0; confidence=high
Rice	`Os11g0137200` - identity=60.8; qcov=0.991; evalue=5.5e-175; confidence=high
GO	GO:0004419 (hydroxymethylglutaryl-CoA lyase activity); GO:0005739 (mitochondrion); GO:0006552 (L-leucine catabolic process); GO:0046951 (ketone body biosynthetic process)
KEGG	smil00280 (Valine, leucine and isoleucine degradation - Salvia miltiorrhiza (redroot sage)); smil00650 (Butanoate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04146 (Peroxisome - Salvia miltiorrhiza (redroot sage))
Pfam	PF00682 (HMGL-like)
InterPro	-
eggNOG	-
NR	GeneID:131016840

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057801595.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057801595.1`
3	Nucleus	细胞核	0.00000	`XP_057801595.1`
4	Chromosome	染色体	0.00000	`XP_057801595.1`
5	Centromere	着丝粒	0.00000	`XP_057801595.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:25907657`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C27,C9
`Chr1:25910149`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801595.1

443 aa

222

443

HMGL-like

PF00682 HMGL-like 145-417 aa

XP_057801603.1

425 aa

212

425

HMGL-like

PF00682 HMGL-like 127-399 aa

XP_057801608.1

425 aa

212

425

HMGL-like

PF00682 HMGL-like 127-399 aa

XP_057801614.1

425 aa

212

425

HMGL-like

PF00682 HMGL-like 127-399 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801595.1`	Pfam	`PF00682`	HMGL-like	Domain	145	417	6.7e-57	193.6	HMGL-like
`XP_057801603.1`	Pfam	`PF00682`	HMGL-like	Domain	127	399	6e-57	193.7	HMGL-like
`XP_057801608.1`	Pfam	`PF00682`	HMGL-like	Domain	127	399	6e-57	193.7	HMGL-like
`XP_057801614.1`	Pfam	`PF00682`	HMGL-like	Domain	127	399	6e-57	193.7	HMGL-like

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057945620.1
TCCCACCATTCCTCTCTCTCTCTCTCTCTCTCTCTAGATTCCTACTGCTGGCCAGTCATTGCATTGAAGTCCCAATTACAAGAAATTCAAAATCCCCACACCTAGAAAACCCTAAATCGCAATCAACTCAACAAATTCACGCGCAGAATTCGAACAAGTGTAGTTGTTTTTTATTCTATATACAGAATTCTCCGTCACGTTTGTGCGGTGCCTTGTTCGCTATTCTGTCCCATACGCACCAACCACTACTTGTCCCATTT...

XM_057945625.1
TCCCACCATTCCTCTCTCTCTCTCTCTCTCTCTCTAGATTCCTACTGCTGGCCAGTCATTGCATTGAAGTCCCAATTACAAGAAATTCAAAATCCCCACACCTAGAAAACCCTAAATCGCAATCAACTCAACAAATTCACGCGCAGAATTCGAACAAGTGTAGTTGTTTTTTATTCTATATACAGAATTCTCCGTCACGTTTGTGCGGTGCCTTGTTCGCTATTCTGTCCCATACGCACCAACCACTACTTGTCCCATTT...

CDS

4 records

下载 CDS FASTA

LOC131016840
ATGGCGTTTGTGGTTGGACCTATATGGATTGCTGCTGCATTCACTTTCACAACAATGTCAAGTTTGGAGGAGCCTCTTGGTCTTGACAAGCTTCCAGCTTTGAGCAATATTGACCAAATTTATAGGTTCTCATCCAGTGCATGCAGGCCTATCCCAGAAGATATGGGAATGGGAAACTGCTGGATTGAAGGGAGAAATTGCAGCTCATCTAATAGCTGCAACGAAGATTTTGAAGAGTACAAACAAGAGCATGTTACGCG...

LOC131016840
ATGTCAAGTTTGGAGGAGCCTCTTGGTCTTGACAAGCTTCCAGCTTTGAGCAATATTGACCAAATTTATAGGTTCTCATCCAGTGCATGCAGGCCTATCCCAGAAGATATGGGAATGGGAAACTGCTGGATTGAAGGGAGAAATTGCAGCTCATCTAATAGCTGCAACGAAGATTTTGAAGAGTACAAACAAGAGCATGTTACGCGGAGAAGACAAAAAAGAAACTCGTTCCAGAGGACTTCAAGTCTAGGTAGAGGTTC...

Protein

4 records

下载 Protein FASTA

XP_057801595.1
MAFVVGPIWIAAAFTFTTMSSLEEPLGLDKLPALSNIDQIYRFSSSACRPIPEDMGMGNCWIEGRNCSSSNSCNEDFEEYKQEHVTRRRQKRNSFQRTSSLGRGSVACGNMSEFHYLSNHQCPSCCDNDTGESKYMLFKGVPKYVKIVEVGPRDGLQNEKTVVPTSVKIKLIRKLVSSGLAVVEATSFVSPKWVPQLADAKDVMEAIKNLEGVRLPVLTPNLKGFEAAVAAGAKEVAVFASASESFSKSNINCSIEESLA...

XP_057801603.1
MSSLEEPLGLDKLPALSNIDQIYRFSSSACRPIPEDMGMGNCWIEGRNCSSSNSCNEDFEEYKQEHVTRRRQKRNSFQRTSSLGRGSVACGNMSEFHYLSNHQCPSCCDNDTGESKYMLFKGVPKYVKIVEVGPRDGLQNEKTVVPTSVKIKLIRKLVSSGLAVVEATSFVSPKWVPQLADAKDVMEAIKNLEGVRLPVLTPNLKGFEAAVAAGAKEVAVFASASESFSKSNINCSIEESLARYRAVTSAAKKLSIPVRG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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