当前解析结果
SmilChr03G000357| 统一新 Gene ID | SmilChr03G000357 |
|---|---|
| 名称 | SmilChr03G000357 |
| 描述 | putative late blight resistance protein homolog R1B-16 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 4007968 - 4011494 / - |
| NCBI Gene ID | LOC131016844 |
|---|---|
| GeneID | 131016844 |
| locus_tag | - |
| NCBI Name | LOC131016844 |
| 原始查询 | LOC131016844 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1B-16 |
| 产物 | putative late blight resistance protein homolog R1B-16 |
| Arabidopsis | AT3G46530 (RPP13)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:823806] identity=29.2; qcov=0.788; evalue=2.8e-64; confidence=low |
| Rice | Os10g0183000 (OsLSR)- identity=32.3; qcov=0.729; evalue=3.77e-69; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016844 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.60000 | XP_057801598.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057801598.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057801598.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057801598.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057801598.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:4009153 |
TG |
T |
1bp_deletion | frameshift_variant | 65 | A10,A18,A2,A20,A21,A22,A25,A4,A7,A8,B106,B110,B115,B117,B118,B120,B121,B124,B125,B129,B130,B136,B138,B14,B140,B15,B29,B30,B31,B37,B45,B46,B48,B50,B59,B72,B8,B80,B86,B87,B89,B9,B90,B92,C12,C17,C26,C29,C3,C33,C34,C35,C36,C42,C46,C51,C52,C58,C60,C7,C72,C76,C78,D10,D3 |
Chr3:4009155 |
G |
GC |
1bp_insertion | frameshift_variant | 74 | A10,A18,A2,A20,A21,A22,A25,A4,A7,A8,A9,B106,B110,B117,B118,B120,B124,B125,B130,B132,B134,B136,B138,B139,B14,B140,B15,B20,B29,B30,B31,B34,B37,B45,B46,B48,B50,B59,B61,B72,B73,B8,B80,B86,B87,B89,B9,B92,B99,C12,C17,C18,C2,C26,C29,C3,C34,C35,C36,C42,C45,C46,C51,C52,C54,C58,C60,C7,C72,C76,C78,C85,D10,D3 |
Chr3:4009212 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B107,B122 |
Chr3:4009376 |
GT |
G |
1bp_deletion | frameshift_variant | 3 | B117,B31,B34 |
Chr3:4009376 |
GT |
G |
1bp_deletion | CDS_variant | 3 | B117,B31,B34 |
Chr3:4009453 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B83 |
Chr3:4009526 |
C |
T |
EMS_canonical_SNV | stop_gained | 7 | A13,A15,B108,B109,B80,C36,C81 |
Chr3:4009545 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B83 |
Chr3:4009570 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B83,C10 |
Chr3:4009574 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B68,C10 |
Chr3:4009668 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C31 |
Chr3:4009672 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B62,C70 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057801598.1PF00931
NB-ARC 174-345 aa
PF23559
WHD_DRP 420-492 aa
PF23598
LRR_14 548-721 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057801598.1 |
Pfam | PF00931 |
NB-ARC | Domain | 174 | 345 | 5.2e-42 | 144.1 | NB-ARC domain |
XP_057801598.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 420 | 492 | 1.9e-19 | 70.2 | Disease resistance protein Winged helix domain |
XP_057801598.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 548 | 721 | 3.4e-15 | 56.4 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。