Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000196`

染色体: Chr03 坐标: 2222923-2228958 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000196`
名称	SmilChr03G000196
描述	uncharacterized SmilChr03G000196
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	2222923 - 2228958 / `+`

ID 对照

NCBI Gene ID	`LOC131016846`
GeneID	`131016846`
locus_tag	`-`
NCBI Name	`LOC131016846`
原始查询	`LOC131016846`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	LETM1-like protein [Source:NCBI gene (formerly Entrezgene);Acc:842865]; symbol=LETM2; hit=AT1G65540; species=arabidopsis; confidence=high
产物	LETM1-like protein [Source:NCBI gene (formerly Entrezgene);Acc:842865]; symbol=LETM2; hit=AT1G65540; species=arabidopsis; confidence=high
Arabidopsis	`AT1G65540` (LETM2) LETM1-like protein [Source:NCBI gene (formerly Entrezgene);Acc:842865] identity=75.8; qcov=0.865; evalue=0; confidence=high
Rice	`Os04g0496800` - identity=71.2; qcov=0.879; evalue=0; confidence=high
GO	GO:0005509 (calcium ion binding); GO:0005743 (mitochondrial inner membrane); GO:0030003 (intracellular monoatomic cation homeostasis); GO:0043022 (ribosome binding)
KEGG	-
Pfam	PF07766 (LETM1_RBD); PF13499 (EF-hand_7)
InterPro	-
eggNOG	-
NR	GeneID:131016846

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057801601.1`
2	Mitochondrion membrane	线粒体膜	1.00000	`XP_057801601.1`
3	Mitochondrion inner membrane	线粒体内膜	1.00000	`XP_057801601.1`
4	Nucleus	细胞核	0.00000	`XP_057801601.1`
5	Chromosome	染色体	0.00000	`XP_057801601.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:2223517`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B91
`Chr3:2223567`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C32,C68
`Chr3:2223589`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A14,B24,B8,C33
`Chr3:2223594`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr3:2223604`	`CTG`	`C`	2bp_deletion	frameshift_variant	1	C71
`Chr3:2223604`	`CTG`	`C`	2bp_deletion	CDS_variant	1	C71
`Chr3:2223607`	`AT`	`A`	1bp_deletion	frameshift_variant	1	C71
`Chr3:2223607`	`AT`	`A`	1bp_deletion	CDS_variant	1	C71
`Chr3:2223614`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B30,B67
`Chr3:2223627`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B65,C20,C6
`Chr3:2223690`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A5,B62,B75
`Chr3:2223695`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801601.1

735 aa

368

735

LETM1_RBD

EF-hand_7

PF07766 LETM1_RBD 223-455 aa PF13499 EF-hand_7 659-721 aa

XP_057801602.1

735 aa

368

735

LETM1_RBD

EF-hand_7

PF07766 LETM1_RBD 223-455 aa PF13499 EF-hand_7 659-721 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801601.1`	Pfam	`PF07766`	LETM1_RBD	Domain	223	455	2.5e-86	289.7	LETM1-like, RBD
`XP_057801601.1`	Pfam	`PF13499`	EF-hand_7	Domain	659	721	2.1e-08	35.1	EF-hand domain pair
`XP_057801602.1`	Pfam	`PF07766`	LETM1_RBD	Domain	223	455	2.5e-86	289.7	LETM1-like, RBD
`XP_057801602.1`	Pfam	`PF13499`	EF-hand_7	Domain	659	721	2.1e-08	35.1	EF-hand domain pair

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057945619.1
GCTCGTATTTTGTTGGATGCACACTGATCCGCCGCAGCTGATAACTCCATACCCGTTTTCATGCTCCAAGCACAATCGAGCTTCTATAGCGCTCCAAATCTCTACCAAAATTCTGATTAAAAAAATACGTAGAGAGAATCAAAGAGGACTTGCAATTTTCGTTCGCATTTCTTCGCTCATTCTCGGTCGATTGTCTCGTGCATTGCGAGTTTGAAATTCACAATCGTGAAACTGCCAGTTATCAGAATTGTTGGAATGTG...

XM_057945618.1
CGAGCTTCTATAGCGCTCCAAATCTCTACCAAAATTCTGATTAAAAAAATACGTAGAGAGAATCAAAGAGGACTTGCAATTTTCGTTCGCATTTCTTCGCTCATTCTCGGTCGATTGTCTCGTGCATTGCGAGGTCGGGATTTTTCATTGATTTTTCCTCTCAGAATAATCCACTTTTTACTTCTATTTTCAGAATTTATGTTTGAAATTCACAATCGTGAAACTGCCAGTTATCAGAATTGTTGGAATGTGCTGCGATA...

CDS

2 records

下载 CDS FASTA

LOC131016846
ATGATGGCTTCAAGAGCAATATTGCAAAAGAAAAAGTGTCTGCTTGATTCATTCAAGCGGCCACATTATTTAGTTCAAAGGCTCGTATGTAGTGACCATGGAAGATTGCTAGACATTCCCGATTCACAGCGTGGGAGTTGGCCTCTGATTCTTTCGGATTCAGATAACAGAGAGAAACAACATTCATATTTTCTAACCAGACAAATGGCTCAACACACTCCGACAAAAAAGTATGCGAGTTTGCACCGTGAGATTGGAGT...

Protein

2 records

下载 Protein FASTA

XP_057801601.1
MMASRAILQKKKCLLDSFKRPHYLVQRLVCSDHGRLLDIPDSQRGSWPLILSDSDNREKQHSYFLTRQMAQHTPTKKYASLHREIGVCHLSTAPAGKPELEGDDNKKEPVKQKKDPSPEECDQAVEGLSSVKAKAKAKAKQLQDSSKGVKYIVKKIRAFLLGIGPALRAIASMSWEDWANKLRHWKDEFKSTLQHYWLGTKLLWVDVRISLRLLLKLGSGRTLSRRERQQLTRTTADIFRLVPFAVFVLVPFMEFLLPAF...

XP_057801602.1
MMASRAILQKKKCLLDSFKRPHYLVQRLVCSDHGRLLDIPDSQRGSWPLILSDSDNREKQHSYFLTRQMAQHTPTKKYASLHREIGVCHLSTAPAGKPELEGDDNKKEPVKQKKDPSPEECDQAVEGLSSVKAKAKAKAKQLQDSSKGVKYIVKKIRAFLLGIGPALRAIASMSWEDWANKLRHWKDEFKSTLQHYWLGTKLLWVDVRISLRLLLKLGSGRTLSRRERQQLTRTTADIFRLVPFAVFVLVPFMEFLLPAF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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