Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000321`

染色体: Chr03 坐标: 3655196-3658471 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000321`
名称	SmilChr03G000321
描述	putative late blight resistance protein homolog R1C-3
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	3655196 - 3658471 / `-`

ID 对照

NCBI Gene ID	`LOC131016852`
GeneID	`131016852`
locus_tag	`-`
NCBI Name	`LOC131016852`
原始查询	`LOC131016852`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative late blight resistance protein homolog R1C-3
产物	putative late blight resistance protein homolog R1C-3
Arabidopsis	`AT1G59780` (AT1G59780) NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:842271] identity=38.9; qcov=0.345; evalue=1.12e-12; confidence=low
Rice	`Os12g0131701` - identity=44.8; qcov=0.185; evalue=2.86e-11; confidence=weak
GO	GO:0043531 (ADP binding); GO:0050832 (defense response to fungus)
KEGG	-
Pfam	PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131016852

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.60000	`XP_057801612.1`
2	Cytosol	细胞质基质	0.40000	`XP_057801612.1`
3	Cell membrane	细胞膜	0.40000	`XP_057801613.1`
4	Nucleus	细胞核	0.20000	`XP_057801612.1`
5	Chromosome	染色体	0.00000	`XP_057801612.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:3655339`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C7
`Chr3:3655353`	`GC`	`G`	1bp_deletion	frameshift_variant	1	C7
`Chr3:3655353`	`GC`	`G`	1bp_deletion	CDS_variant	1	C7
`Chr3:3655364`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C13,C68
`Chr3:3655399`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B71
`Chr3:3655408`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A19,B29,B77,C18
`Chr3:3655410`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B29,B55,C18
`Chr3:3655412`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B10,C87
`Chr3:3655461`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A19,A23,C24
`Chr3:3655476`	`CA`	`C`	1bp_deletion	frameshift_variant	1	B140
`Chr3:3655476`	`CA`	`C`	1bp_deletion	CDS_variant	1	B140
`Chr3:3655484`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B10,C87

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801612.1

613 aa

306

613

NB-ARC

WHD_DRP

LRR_14

PF00931 NB-ARC 2-63 aa PF23559 WHD_DRP 148-218 aa PF23598 LRR_14 268-515 aa

XP_057801613.1

313 aa

156

313

NB-ARC

PF00931 NB-ARC 248-310 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801612.1`	Pfam	`PF00931`	NB-ARC	Domain	2	63	3.6e-08	33.9	NB-ARC domain
`XP_057801612.1`	Pfam	`PF23559`	WHD_DRP	Domain	148	218	2.9e-18	66.4	Disease resistance protein Winged helix domain
`XP_057801612.1`	Pfam	`PF23598`	LRR_14	Repeat	268	515	9.7e-23	81.2	Leucine-rich repeat region
`XP_057801613.1`	Pfam	`PF00931`	NB-ARC	Domain	248	310	1.4e-13	51.5	NB-ARC domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057945629.1
GTTTGGCATTAATGTGATTCTGAAAGGTGGATGAAAAGCTGCACACATAATGTTTCTGATAATAATTGAGAAGAGGAGATATACCCATTTTACACATTGTTTTTGCTGAACCTAAACTCAGATTCTATCAAATTCTTTCTCAGAAAAATATACACTGTTTTTCCTTGGATCATGGCAGCCTATGCAGCCATAGTTTCTCTTATGAATACCATCAATCAGATCGAGCACCACCCTTCCCCTCCAATTTCTATCCACAAACA...

XM_057945630.1
TGGCATTAATGTGATTCTGAAAGGTGGATGAAAAGCTGCACACATAATGTTTCTGATAATAATTGAGAAGAGGAGATATACCCATTTTACACATTGTTTTTGCTGAACCTAAACTCAGATTCTATCAAATTCTTTCTCAGAAAAATATACACTGTTTTTCCTTGGATCATGGCAGCCTATGCAGCCATAGTTTCTCTTATGAATACCATCAATCAGATCGAGCACCACCCTTCCCCTCCAATTTCTATCCACAAACAACA...

CDS

2 records

下载 CDS FASTA

LOC131016852
ATGTGGAGTGTAGAGGTGTGGTACAAGATAAGGTTTTTCTTTCCCGATTACAATGATGGGAGTCGAGTAATTGTAACAACTAGGCTCTCAAACTTGGCTACTGAGTTGACAAACTCTAACAGCATTGGTATGAGATTTTTAGATGACGTTTGTAGCTGGAGTTTGTTCTCCAAAACTGTATTTGGGGATGAGGTTTTTCCTCTTCAACTCGAGGAAATCGGAAAGAAGATCGTGGGGAAGTGTAAGGGACTTCCTTTGTC...

LOC131016852
ATGGCAGCCTATGCAGCCATAGTTTCTCTTATGAATACCATCAATCAGATCGAGCACCACCCTTCCCCTCCAATTTCTATCCACAAACAACAACTTGAATCTCTCACTCAAATTCTTACCTTTTTGCAGGAATTTCTTGAAAGTTATAAGTCCCCTGTTGCCGATGGAGATGAAGCTGATCCGCTGGAGATGCGTATCGCAGATGCAGCTCATGCTGTTGAAGATGTTATCGAATCACATATTGTGGACAAGCTTCAGCC...

Protein

2 records

下载 Protein FASTA

XP_057801612.1
MWSVEVWYKIRFFFPDYNDGSRVIVTTRLSNLATELTNSNSIGMRFLDDVCSWSLFSKTVFGDEVFPLQLEEIGKKIVGKCKGLPLSIAVIGGLLAKSELTLEYWEHIEKNLSSIVNSENDEYWLRVLKLSYDHLPAYLKPCFLYMGMFGEDEVIRTAQLMRLWVSEGFLKPIINKSLETMANEYLKELVDRNLILVHGLGAVGNIKYCKMHDLLRDLSFQEAEKQSFYYVLGQHCPQGINSQRRIVIPRGISDKTVRDA...

XP_057801613.1
MAAYAAIVSLMNTINQIEHHPSPPISIHKQQLESLTQILTFLQEFLESYKSPVADGDEADPLEMRIADAAHAVEDVIESHIVDKLQPRRSKRIADAAYAAEDAIESHIVDKLQLRRSKKAKIDTAEADEQINFYQDRLQQVIEEMNVIKKEAMENELGRSMSPNEEFFEGCDTSSDYSDEVDAVGKEVSCIDFYEDLQRVIEEMNVIKKEAMETSADAQLQRKVSSTHAGSLTSSSTVKKSMMVGFDDVVLQLLDKLTGG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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