Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000180`

染色体: Chr03 坐标: 1928414-1933218 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000180`
名称	SmilChr03G000180
描述	uncharacterized SmilChr03G000180
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	1928414 - 1933218 / `-`

ID 对照

NCBI Gene ID	`LOC131016867`
GeneID	`131016867`
locus_tag	`-`
NCBI Name	`LOC131016867`
原始查询	`LOC131016867`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Ribosomal protein S5 family protein [Source:NCBI gene (formerly Entrezgene);Acc:842796]; symbol=AT1G64880; hit=AT1G64880; species=arabidopsis; confidence=high
产物	Ribosomal protein S5 family protein [Source:NCBI gene (formerly Entrezgene);Acc:842796]; symbol=AT1G64880; hit=AT1G64880; species=arabidopsis; confidence=high
Arabidopsis	`AT1G64880` (AT1G64880) Ribosomal protein S5 family protein [Source:NCBI gene (formerly Entrezgene);Acc:842796] identity=56.2; qcov=1.06; evalue=0; confidence=high
Rice	`Os02g0102400` - identity=58.4; qcov=0.83; evalue=1.43e-168; confidence=high
GO	GO:0003723 (RNA binding); GO:0003735 (structural constituent of ribosome); GO:0005840 (ribosome); GO:0006412 (translation)
KEGG	smil03010 (Ribosome - Salvia miltiorrhiza (redroot sage))
Pfam	PF00333 (Ribosomal_S5); PF03719 (Ribosomal_S5_C)
InterPro	-
eggNOG	-
NR	GeneID:131016867

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057801629.1`
2	Nucleus	细胞核	0.00000	`XP_057801629.1`
3	Chromosome	染色体	0.00000	`XP_057801629.1`
4	Centromere	着丝粒	0.00000	`XP_057801629.1`
5	Chromatin	染色质	0.00000	`XP_057801629.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:1929665`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B23,B39,B94,C13
`Chr3:1929923`	`A`	`AT`	1bp_insertion	frameshift_variant	1	B139
`Chr3:1929923`	`A`	`AT`	1bp_insertion	CDS_variant	1	B139
`Chr3:1929927`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B113,B21,B28,B31,C35
`Chr3:1929935`	`TG`	`T`	1bp_deletion	frameshift_variant	11	B104,B29,B33,B34,B78,C21,C29,C61,C73,C87,D3
`Chr3:1930157`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B31,C36
`Chr3:1930204`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C41
`Chr3:1930492`	`C`	`CTA`	2bp_insertion	frameshift_variant	9	A13,B101,B7,C27,C52,C55,C63,C68,D8
`Chr3:1930517`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C30,C75
`Chr3:1930518`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C43
`Chr3:1930528`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B138,B32,B42,C3,C49
`Chr3:1930568`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B36,B48,C38,C74

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801629.1

493 aa

246

493

Ribosomal_S5

Ribosomal_S5_C

PF00333 Ribosomal_S5 336-400 aa PF03719 Ribosomal_S5_C 415-482 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801629.1`	Pfam	`PF00333`	Ribosomal_S5	Domain	336	400	2.1e-19	70.0	Ribosomal protein S5, N-terminal domain
`XP_057801629.1`	Pfam	`PF03719`	Ribosomal_S5_C	Domain	415	482	2.8e-21	75.4	Ribosomal protein S5, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057945646.1
AGTTTTTGCAAATTAAACCTAAAGAATAAAAATATAGAAACTCCACACACTGAAAATCCGATCGGCGACGATACACATGAGATAAACAACCAAAACCCTTAAAGCCCTAACCCCTTCCGCCACCACCTCAATCGGATCTCCGCCGCAATGAGCAGAACGACGGCCTTGTGCCGCCTCCTCCTCCGCCGCCGCACTCTCTGCTCCACCCCGAGATACTCTCCTCCTCCGCCAAGCCCCATTTTCGCCACTCAAATCACTCG...

CDS

1 records

下载 CDS FASTA

LOC131016867
ATGAGCAGAACGACGGCCTTGTGCCGCCTCCTCCTCCGCCGCCGCACTCTCTGCTCCACCCCGAGATACTCTCCTCCTCCGCCAAGCCCCATTTTCGCCACTCAAATCACTCGAAATTACAGCTCCAACTTCAGCGATTTATCCCCGAACGCGCGTTTGGCCGCCGCGAACCGCGCGTTCGACGAGATCGAAGCTGCAGCGGCCAGCGAGAGGAGGCGGGAGAGGGAGGCGAAGATAAGAGCGGGGATTGCAGTCGACGA...

Protein

1 records

下载 Protein FASTA

XP_057801629.1
MSRTTALCRLLLRRRTLCSTPRYSPPPPSPIFATQITRNYSSNFSDLSPNARLAAANRAFDEIEAAAASERRREREAKIRAGIAVDDEEEEEDYLGVGPLIEKYEKQNAKDKPSELNRHEEPTDSDSEPEDEEAINMRSDMFQKKFDQFEKFLDKFSKAETFDDAFKWMKIIDEFEEKHFALKVEYRVIGELMNKLRVAEGKEKFLLQVKLNRALRMAEARDAFDPNDPANYGIIEREDDGGSVDHEEDREKEEDKETKE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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