当前解析结果
SmilChr03G000310| 统一新 Gene ID | SmilChr03G000310 |
|---|---|
| 名称 | SmilChr03G000310 |
| 描述 | uncharacterized SmilChr03G000310 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 3539980 - 3542995 / - |
| NCBI Gene ID | LOC131016882 |
|---|---|
| GeneID | 131016882 |
| locus_tag | - |
| NCBI Name | LOC131016882 |
| 原始查询 | LOC131016882 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Piz; symbol=Piz; hit=Os06g0286700; species=rice; confidence=low |
| 产物 | Piz; symbol=Piz; hit=Os06g0286700; species=rice; confidence=low |
| Arabidopsis | -- |
| Rice | Os06g0286700 (Piz)- identity=26.8; qcov=0.426; evalue=3.6e-07; confidence=low |
| GO | GO:0006457 (protein folding); GO:0043014 (alpha-tubulin binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016882 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.80000 | XP_057801649.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057801649.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057801649.1 |
| 4 | Cell membrane | 细胞膜 | 0.20000 | XP_057801649.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057801649.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:3540207 |
C |
CTA |
2bp_insertion | frameshift_variant | 8 | B109,C21,C32,C36,C67,C68,C81,C83 |
Chr3:3540209 |
A |
ATC |
2bp_insertion | frameshift_variant | 10 | A8,B100,B128,B134,B16,B70,B77,C15,C51,C79 |
Chr3:3540212 |
TAG |
T |
2bp_deletion | frameshift_variant | 37 | A14,B101,B105,B118,B129,B139,B28,B34,B37,B38,B40,B45,B48,B55,B59,B65,B67,B7,C1,C13,C14,C27,C30,C33,C34,C35,C47,C56,C64,C69,C70,C75,C77,C9,D1,D2,D3 |
Chr3:3540228 |
A |
AT |
1bp_insertion | frameshift_variant | 2 | B68,B98 |
Chr3:3540228 |
A |
AT |
1bp_insertion | CDS_variant | 2 | B68,B98 |
Chr3:3540255 |
CTG |
C |
2bp_deletion | frameshift_variant | 42 | A13,A14,A9,B101,B118,B139,B14,B28,B31,B34,B38,B39,B45,B48,B55,B59,B7,B71,B81,B84,B88,C1,C13,C14,C2,C20,C27,C30,C32,C34,C37,C43,C54,C57,C63,C74,C80,C82,D1,D10,D3,D8 |
Chr3:3540257 |
G |
A |
EMS_canonical_SNV | stop_gained | 61 | A11,A19,A2,A21,A24,A9,B1,B104,B105,B112,B114,B120,B122,B13,B134,B135,B19,B22,B23,B24,B25,B30,B31,B41,B46,B52,B54,B63,B64,B67,B71,B77,B83,B86,B9,B90,B95,B97,C10,C18,C2,C22,C25,C26,C28,C31,C36,C41,C48,C5,C53,C6,C60,C61,C69,C72,C73,C77,C84,C9,D2 |
Chr3:3540260 |
C |
CAT |
2bp_insertion | frameshift_variant | 26 | A14,A9,B101,B118,B139,B28,B31,B34,B38,B45,B48,B55,B59,B7,C1,C13,C14,C27,C30,C34,C43,C74,C82,D1,D3,D8 |
Chr3:3540263 |
CT |
C |
1bp_deletion | frameshift_variant | 19 | A13,B14,B39,B45,B71,B81,B84,B88,C2,C20,C32,C37,C54,C57,C63,C74,C80,D10,D8 |
Chr3:3540271 |
T |
TCA |
2bp_insertion | frameshift_variant | 10 | B125,B31,B42,B45,B69,B76,B89,C36,C68,C83 |
Chr3:3540279 |
AAG |
A |
2bp_deletion | frameshift_variant | 14 | A1,A9,B101,B71,C11,C2,C32,C43,C48,C55,C60,C61,C80,C84 |
Chr3:3540282 |
CCT |
C |
2bp_deletion | frameshift_variant | 5 | A20,A21,B87,C12,C7 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。