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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G000072

染色体: Chr03 坐标: 900859-911088 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G000072
名称SmilChr03G000072
描述stearoyl-[acyl-carrier-protein] 9-desaturase, chloroplastic
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向900859 - 911088 / +

ID 对照

NCBI Gene IDLOC131016896
GeneID131016896
locus_tag-
NCBI NameLOC131016896
原始查询LOC131016896

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述stearoyl-[acyl-carrier-protein] 9-desaturase, chloroplastic
产物stearoyl-[acyl-carrier-protein] 9-desaturase%2C chloroplastic
ArabidopsisAT3G02630 (AT3G02630)
Plant stearoyl-acyl-carrier-protein desaturase family protein [Source:NCBI gene (formerly Entrezgene);Acc:820773]
identity=80.2; qcov=0.312; evalue=0; confidence=low
RiceOs04g0379900
-
identity=79.8; qcov=0.31; evalue=0; confidence=low
GOGO:0006633 (fatty acid biosynthetic process); GO:0009570 (chloroplast stroma); GO:0045300 (stearoyl-[ACP] desaturase activity)
KEGGsmil00061 (Fatty acid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01040 (Biosynthesis of unsaturated fatty acids - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01212 (Fatty acid metabolism - Salvia miltiorrhiza (redroot sage))
PfamPF03405 (FA_desaturase_2); PF12253 (CAF1A_dimeriz); PF21796 (Cac1_C)
InterPro-
eggNOG-
NRGeneID:131016896

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Chloroplast 叶绿体 1.00000 XP_057801667.1
2 Nucleus 细胞核 1.00000 XP_057801673.1
3 Chloroplast stroma 叶绿体基质 0.60000 XP_057801667.1
4 Chromosome 染色体 0.00000 XP_057801673.1
5 Centromere 着丝粒 0.00000 XP_057801673.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:909592 C T EMS_canonical_SNV CDS_variant 1 C31
Chr3:909717 G A EMS_canonical_SNV CDS_variant 1 C44
Chr3:909852 C T EMS_canonical_SNV CDS_variant 1 B89
Chr3:909853 G A EMS_canonical_SNV CDS_variant 1 B29
Chr3:909891 G A EMS_canonical_SNV CDS_variant 2 C31,D1
Chr3:909921 C T EMS_canonical_SNV CDS_variant 2 B102,C8
Chr3:910002 C T EMS_canonical_SNV CDS_variant 2 C28,C8
Chr3:910341 G A EMS_canonical_SNV CDS_variant 2 C28,C8
Chr3:910488 G A EMS_canonical_SNV CDS_variant 1 B67
Chr3:910524 G A EMS_canonical_SNV CDS_variant 1 C34
Chr3:910530 C T EMS_canonical_SNV CDS_variant 1 C65
Chr3:910548 C T EMS_canonical_SNV CDS_variant 5 B29,B40,B65,C20,C6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801667.1
390 aa
N
1
195
390
FA_desaturase_2
C
PF03405 FA_desaturase_2 62-384 aa
XP_057801668.1
390 aa
N
1
195
390
FA_desaturase_2
C
PF03405 FA_desaturase_2 62-384 aa
XP_057801669.1
390 aa
N
1
195
390
FA_desaturase_2
C
PF03405 FA_desaturase_2 62-384 aa
XP_057801670.1
388 aa
N
1
194
388
FA_desaturase_2
C
PF03405 FA_desaturase_2 60-382 aa
XP_057801671.1
388 aa
N
1
194
388
FA_desaturase_2
C
PF03405 FA_desaturase_2 60-382 aa
XP_057801672.1
388 aa
N
1
194
388
FA_desaturase_2
C
PF03405 FA_desaturase_2 60-382 aa
XP_057801673.1
1181 aa
N
1
590
1181
CAF1A_dimeriz
Cac1_C
FA_desaturase_2
C
PF12253 CAF1A_dimeriz 497-566 aa PF21796 Cac1_C 725-775 aa PF03405 FA_desaturase_2 853-1175 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057801667.1 Pfam PF03405 FA_desaturase_2 Domain 62 384 6.9e-161 535.2 Fatty acid desaturase
XP_057801668.1 Pfam PF03405 FA_desaturase_2 Domain 62 384 6.9e-161 535.2 Fatty acid desaturase
XP_057801669.1 Pfam PF03405 FA_desaturase_2 Domain 62 384 6.9e-161 535.2 Fatty acid desaturase
XP_057801670.1 Pfam PF03405 FA_desaturase_2 Domain 60 382 6.8e-161 535.2 Fatty acid desaturase
XP_057801671.1 Pfam PF03405 FA_desaturase_2 Domain 60 382 6.8e-161 535.2 Fatty acid desaturase
XP_057801672.1 Pfam PF03405 FA_desaturase_2 Domain 60 382 6.8e-161 535.2 Fatty acid desaturase
XP_057801673.1 Pfam PF12253 CAF1A_dimeriz Family 497 566 1.5e-19 70.6 Chromatin assembly factor 1 subunit A dimerization domain
XP_057801673.1 Pfam PF21796 Cac1_C Domain 725 775 2.3e-17 63.5 Chromatin assembly factor 1 subunit Cac1, C-terminal domain
XP_057801673.1 Pfam PF03405 FA_desaturase_2 Domain 853 1175 1.3e-159 531.0 Fatty acid desaturase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA
XM_057945690.1
GATTTGAAAAATGGCGGACTGCAAAATTGAGGAAATTTTTAGGCGCCAAACAAAGAAATATTCCGCCAAAATCAGCCTCTCACTGGCGGGAAGCTAGCAAATCTACATACCCAAAACCCAAAATCTCACTGCAAAATCGATGATACATTCCCAGAATTTCTGTTGCTCTTTCATTCCTCTCGAGCTTCAGATTTGTTCCGAGCTACATTCAGCTGATCTATCAGTGATTGTCGTCTCCAAAATCTCACAGGAAGAGAAGC...
XM_057945687.1
AAATAGCAGTGGAAGTCTGAAACCAACCATTTGGAGTAGTACAACCAGATCGCTTGACTTAGTTTTCAACATCAGCGGTGGGCGAAGGGTACAACCCCCACAAAGCAGGCGCCGCGCATCAGGTAGTTGTACCTTGGCGAGGAACACTGCCAATTTAGCTCCAACATAGGAAGCATCGCCCTCCACGAGTGGTCGGTGGCAACTGGCAAATTTATTGAGCTACTGCCTCAAATCTAGAGAGATTCTGCCGGAGTATAGCT...

CDS

7 records

下载 CDS FASTA
LOC131016896
ATGGCGGAAGTTGAGCCGATGAAAATTGACGTTGCGGAAGAAATGAAGCCGAAATCGGACGGCTCGGATCAGAAGAAGAGGCCTCAGAAAAGGAAAAGGTTGGAGCCATGTTCGTACAAAGTAAGCCCGGGAGAGAAACAGGCGAAAATAGAGGCATTGCGCAATGAAATCAACAGCCTTGTTAAATTTTGTAGAGATTTAGCGTTGGGAAGCAGAGAGGTGTTGTCGGAATATGTGGAGAAAGTAGGGTTCTCTTCTGT...
LOC131016896
ATGGCGCTGAAACTATGCATTGCTCCGAGCAAGATGCCTTCGTTTCCCGGTTTTCAGCTCAGATCTCACAGGGTTTCCATGGCTTCAACTATCCATTCCCCGTCAGTAGATGCTGGAAAAGCTAAAAAGCCTTTTAGTACCCCTCGGGAGGTTCGTGTTCAAGTCACTCACCCGTTGCCACCAGAGAAGCGCGAGATCTTCAATTCGTTGCAAGATTGGGCTGAAGAAAACATCCTGGTGCTCCTAAAGCCCGTTGAGAA...

Protein

7 records

下载 Protein FASTA
XP_057801667.1
MALKLCIAPSKMPSFPGFQLRSHRVSMASTIHSPSVDAGKAKKPFSTPREVRVQVTHPLPPEKREIFNSLQDWAEENILVLLKPVEKCWQPNDFLPDPSSEGFEEQVRELRKRTKELPDDYFVVLVGDMITEEALPTYQTMLNTLDAVRDETGASLTPWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPGTDKNPYLGFIYTSFQERATFVSHGNTARLAKEHGDLKLAQICGIIAADEKRHE...
XP_057801668.1
MALKLCIAPSKMPSFPGFQLRSHRVSMASTIHSPSVDAGKAKKPFSTPREVRVQVTHPLPPEKREIFNSLQDWAEENILVLLKPVEKCWQPNDFLPDPSSEGFEEQVRELRKRTKELPDDYFVVLVGDMITEEALPTYQTMLNTLDAVRDETGASLTPWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPGTDKNPYLGFIYTSFQERATFVSHGNTARLAKEHGDLKLAQICGIIAADEKRHE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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