当前解析结果
SmilChr03G000370| 统一新 Gene ID | SmilChr03G000370 |
|---|---|
| 名称 | SmilChr03G000370 |
| 描述 | F-box/kelch-repeat protein At3g06240-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 4143797 - 4145166 / - |
| NCBI Gene ID | LOC131016900 |
|---|---|
| GeneID | 131016900 |
| locus_tag | - |
| NCBI Name | LOC131016900 |
| 原始查询 | LOC131016900 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | F-box/kelch-repeat protein At3g06240-like |
| 产物 | F-box/kelch-repeat protein At3g06240-like |
| Arabidopsis | AT3G06240 (AT3G06240)F-box family protein [Source:NCBI gene (formerly Entrezgene);Acc:819798] identity=28.2; qcov=1.09; evalue=1.48e-32; confidence=low |
| Rice | Os09g0479100 (OsFbox492)- identity=23.4; qcov=0.922; evalue=1.15e-14; confidence=weak |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00646 (F-box); PF03478 (Beta-prop_KIB1-4); PF07734 (FBA_1); PF08268 (FBA_3); PF12937 (F-box-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016900 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057801684.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057801684.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057801684.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057801684.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057801684.1 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057801684.1PF00646
F-box 11-51 aa
PF12937
F-box-like 12-54 aa
PF08268
FBA_3 107-303 aa
PF03478
Beta-prop_KIB1-4 122-308 aa
PF07734
FBA_1 125-380 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057801684.1 |
Pfam | PF00646 |
F-box | Domain | 11 | 51 | 2.5e-10 | 40.6 | F-box domain |
XP_057801684.1 |
Pfam | PF12937 |
F-box-like | Domain | 12 | 54 | 7.8e-08 | 32.7 | F-box-like |
XP_057801684.1 |
Pfam | PF08268 |
FBA_3 | Repeat | 107 | 303 | 1.7e-13 | 51.0 | F-box associated beta propeller domain |
XP_057801684.1 |
Pfam | PF03478 |
Beta-prop_KIB1-4 | Repeat | 122 | 308 | 5.5e-08 | 33.3 | KIB1-4 beta-propeller |
XP_057801684.1 |
Pfam | PF07734 |
FBA_1 | Repeat | 125 | 380 | 3.9e-22 | 79.4 | F-box associated beta propeller domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。