当前解析结果
SmilChr03G000133| 统一新 Gene ID | SmilChr03G000133 |
|---|---|
| 名称 | SmilChr03G000133 |
| 描述 | receptor like protein 22-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 1456332 - 1457644 / - |
| NCBI Gene ID | LOC131016905 |
|---|---|
| GeneID | 131016905 |
| locus_tag | - |
| NCBI Name | LOC131016905 |
| 原始查询 | LOC131016905 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | receptor like protein 22-like |
| 产物 | receptor like protein 22-like |
| Arabidopsis | AT2G25440 (RLP20)receptor like protein 20 [Source:NCBI gene (formerly Entrezgene);Acc:817082] identity=41; qcov=0.941; evalue=1.53e-78; confidence=medium |
| Rice | Os12g0222800- identity=43.5; qcov=0.901; evalue=3.39e-80; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF13516 (LRR_6); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016905 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057801688.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057801688.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057801688.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057801688.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057801688.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:1456402 |
G |
A |
EMS_canonical_SNV | stop_gained | 6 | B21,B98,C11,C26,C52,D2 |
Chr3:1456421 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B15 |
Chr3:1456484 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A22,C19 |
Chr3:1456551 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B129,C42,C87 |
Chr3:1456627 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B19,C34 |
Chr3:1456702 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B81,C48 |
Chr3:1456730 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A16,A4,C15 |
Chr3:1456741 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | B32,C16 |
Chr3:1456741 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B32,C16 |
Chr3:1456762 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B78,B79,C13,C24,C39 |
Chr3:1456775 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C29 |
Chr3:1456785 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B54,C86 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057801688.1PF13855
LRR_8 4-63 aa
PF00560
LRR_1 28-50 aa
PF00560
LRR_1 170-190 aa
PF13516
LRR_6 191-203 aa
PF00560
LRR_1 192-213 aa
PF00560
LRR_1 217-238 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057801688.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 4 | 63 | 1.6e-20 | 73.3 | Leucine rich repeat |
XP_057801688.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 28 | 50 | 2.9e-24 | 80.6 | Leucine Rich Repeat |
XP_057801688.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 170 | 190 | 2.9e-24 | 80.6 | Leucine Rich Repeat |
XP_057801688.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 191 | 203 | 9.4e-08 | 32.3 | Leucine Rich repeat |
XP_057801688.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 192 | 213 | 2.9e-24 | 80.6 | Leucine Rich Repeat |
XP_057801688.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 217 | 238 | 2.9e-24 | 80.6 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。