Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000146`

染色体: Chr03 坐标: 1602765-1607781 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000146`
名称	SmilChr03G000146
描述	receptor-like protein 9DC3
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	1602765 - 1607781 / `-`

ID 对照

NCBI Gene ID	`LOC131016928`
GeneID	`131016928`
locus_tag	`-`
NCBI Name	`LOC131016928`
原始查询	`LOC131016928`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	receptor-like protein 9DC3
产物	receptor-like protein 9DC3
Arabidopsis	`AT1G71400` (RLP12) receptor like protein 12 [Source:NCBI gene (formerly Entrezgene);Acc:843481] identity=39.9; qcov=0.903; evalue=2.58e-49; confidence=medium
Rice	`Os12g0222800` - identity=44.1; qcov=0.651; evalue=2.36e-42; confidence=medium
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00560 (LRR_1); PF13855 (LRR_8); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131016928

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057801715.1`
2	Nucleus	细胞核	0.00000	`XP_057801715.1`
3	Chromosome	染色体	0.00000	`XP_057801715.1`
4	Centromere	着丝粒	0.00000	`XP_057801715.1`
5	Chromatin	染色质	0.00000	`XP_057801715.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:1602869`	`T`	`TA`	1bp_insertion	frameshift_variant	6	A7,A9,B102,B109,C34,C43
`Chr3:1603023`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B105,B32,C21
`Chr3:1603054`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C21,D11
`Chr3:1603119`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B124
`Chr3:1603121`	`A`	`AGG`	2bp_insertion	frameshift_variant	6	B11,B42,B55,B93,C19,C84
`Chr3:1603122`	`CA`	`C`	1bp_deletion	frameshift_variant	6	B11,B42,B55,B93,C19,C84
`Chr3:1603136`	`A`	`ACT`	2bp_insertion	frameshift_variant	6	B11,B42,B55,B93,C19,C84
`Chr3:1603171`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B33,C29,C87,D5
`Chr3:1603178`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B32,B70,C16,C59
`Chr3:1603196`	`A`	`AT`	1bp_insertion	frameshift_variant	3	B3,B42,B93
`Chr3:1603196`	`A`	`AT`	1bp_insertion	CDS_variant	3	B3,B42,B93
`Chr3:1603245`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B32

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801715.1

313 aa

156

313

LRR_14

LRR_8

LRR_1

LRR_8

PF23598 LRR_14 12-99 aa PF13855 LRR_8 19-78 aa PF00560 LRR_1 43-65 aa PF00560 LRR_1 67-89 aa PF00560 LRR_1 91-113 aa PF00560 LRR_1 115-137 aa PF00560 LRR_1 163-185 aa PF13855 LRR_8 164-222 aa

XP_057801716.1

289 aa

144

289

LRR_14

LRR_1

LRR_8

PF23598 LRR_14 12-221 aa PF00560 LRR_1 43-65 aa PF00560 LRR_1 67-89 aa PF00560 LRR_1 91-113 aa PF00560 LRR_1 139-161 aa PF13855 LRR_8 140-198 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801715.1`	Pfam	`PF23598`	LRR_14	Repeat	12	99	1.6e-17	64.1	Leucine-rich repeat region
`XP_057801715.1`	Pfam	`PF13855`	LRR_8	Repeat	19	78	7e-29	100.1	Leucine rich repeat
`XP_057801715.1`	Pfam	`PF00560`	LRR_1	Repeat	43	65	1e-24	82.0	Leucine Rich Repeat
`XP_057801715.1`	Pfam	`PF00560`	LRR_1	Repeat	67	89	1e-24	82.0	Leucine Rich Repeat
`XP_057801715.1`	Pfam	`PF00560`	LRR_1	Repeat	91	113	1e-24	82.0	Leucine Rich Repeat
`XP_057801715.1`	Pfam	`PF00560`	LRR_1	Repeat	115	137	1e-24	82.0	Leucine Rich Repeat
`XP_057801715.1`	Pfam	`PF00560`	LRR_1	Repeat	163	185	1e-24	82.0	Leucine Rich Repeat
`XP_057801715.1`	Pfam	`PF13855`	LRR_8	Repeat	164	222	7e-29	100.1	Leucine rich repeat
`XP_057801716.1`	Pfam	`PF23598`	LRR_14	Repeat	12	221	3.2e-14	53.2	Leucine-rich repeat region
`XP_057801716.1`	Pfam	`PF00560`	LRR_1	Repeat	43	65	3.2e-21	71.6	Leucine Rich Repeat
`XP_057801716.1`	Pfam	`PF00560`	LRR_1	Repeat	67	89	3.2e-21	71.6	Leucine Rich Repeat
`XP_057801716.1`	Pfam	`PF00560`	LRR_1	Repeat	91	113	3.2e-21	71.6	Leucine Rich Repeat
`XP_057801716.1`	Pfam	`PF00560`	LRR_1	Repeat	139	161	3.2e-21	71.6	Leucine Rich Repeat
`XP_057801716.1`	Pfam	`PF13855`	LRR_8	Repeat	140	198	7.5e-23	80.8	Leucine rich repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XR_009099263.1
TATACCATCGAGTTTGTACCAATGTCAACAACTTGAGAGTATTCGCTTGTCAGACAACAACTTTGGCGGATATGTGCCTACACAAATTTGGAATATCACACTGTTGAAGGAATTAGACCTTGGTTCGAACCATTTGAGGGGACATTTGCACGCACAATAACCTTCAAAGACTCAAACTACTTCACCTGTCGTGGAACAAATTGGAAGGAGATATACCATCGAGTTTGTACCAATGTCCACAACTTGAGAGTATTCACTTG...

XR_009099262.1
TATACCATCGAGTTTGTACCAATGTCAACAACTTGAGAGTATTCGCTTGTCAGACAACAACTTTGGCGGATATGTGCCTACACAAATTTGGAATATCACACTGTTGAAGGAATTAGACCTTGGTTCGAACCATTTGAGGGGACATTTGCACGCACAATAACCTTCAAAGACTCAAACTACTTCACCTGTCGTGGAACAAATTGGAAGGAGATATACCATCGAGTTTGTACCAATGTCCACAACTTGAGAGTATTCACTTG...

CDS

2 records

下载 CDS FASTA

LOC131016928
ATGAGTTACAACAATCTTAGTGAACCATTTCCAAGACAAATTTGGAACATCACAACTCTCCATGAACTACACCTTCGTGATGCCTCTTTAAATGGTCCAATACCGTCTACCATTGGAAATCTATCAAATTTGATTATTTTATCGCTCTCTTCCAACAAATTAAACGGTCCAATACCATCCACCATTGGCAATCTAACAAATCTGATTACTTTATCGCTCTCTTCCAACAAATTAAATGGTGAGCTTCCATCCTCCATCTG...

LOC131016928
ATGAGTTACAACAATCTTAGTGAACCATTTCCAAGACAAATTTGGAACATCACAACTCTCCATGAACTACACCTTCGTGATGCCTCTTTAAATGGTATAATACCATCCACCATTGAGAATCTATCAAATCTGCAGTGGCTAGAGCTCTCTTCCAACCAATTAAATGGTCCAATACCGTCTACCATTGGAAATCTATCAAATTTGATTATTTTATCGCTCTCTTCCAACAAATTAAACGGTCCAATACCATCCACCATTGG...

Protein

2 records

下载 Protein FASTA

XP_057801715.1
MSYNNLSEPFPRQIWNITTLHELHLRDASLNGIIPSTIENLSNLQWLELSSNQLNGPIPSTIGNLSNLIILSLSSNKLNGPIPSTIGNLTNLITLSLSSNKLNGELPSSICNLTSLDVLLLSNNSLEGTIPQCFQNFQSLLIFHLNANHFSGLIPSIFIKGCSLISINLSGNKLQGSLPKSLINCKSLKGLDVGNNRILDKFPFWMEALPQLRVLVLKSNKFDGNMSLPSQSYLSFPKLQVLDISRNASGGSLPQRYFKN...

XP_057801716.1
MSYNNLSEPFPRQIWNITTLHELHLRDASLNGPIPSTIGNLSNLIILSLSSNKLNGPIPSTIGNLTNLITLSLSSNKLNGELPSSICNLTSLDVLLLSNNSLEGTIPQCFQNFQSLLIFHLNANHFSGLIPSIFIKGCSLISINLSGNKLQGSLPKSLINCKSLKGLDVGNNRILDKFPFWMEALPQLRVLVLKSNKFDGNMSLPSQSYLSFPKLQVLDISRNASGGSLPQRYFKNFKAMMDVKANYEDMNFVAHVEMTM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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