当前解析结果
SmilChr03G000059| 统一新 Gene ID | SmilChr03G000059 |
|---|---|
| 名称 | SmilChr03G000059 |
| 描述 | uncharacterized SmilChr03G000059 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 624084 - 626617 / - |
| NCBI Gene ID | LOC131016934 |
|---|---|
| GeneID | 131016934 |
| locus_tag | - |
| NCBI Name | LOC131016934 |
| 原始查询 | LOC131016934 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os08g0543000; species=rice; confidence=medium |
| 产物 | hit=Os08g0543000; species=rice; confidence=medium |
| Arabidopsis | AT2G40070 (AT2G40070)flocculation FLO11-like protein [Source:NCBI gene (formerly Entrezgene);Acc:818595] identity=47.4; qcov=0.342; evalue=1.46e-15; confidence=low |
| Rice | Os08g0543000- identity=40.6; qcov=0.581; evalue=7.58e-24; confidence=medium |
| GO | GO:0043622 (cortical microtubule organization); GO:0055028 (cortical microtubule) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016934 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057801725.1 |
| 2 | Cytoskeleton | 细胞骨架 | 1.00000 | XP_057801725.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057801725.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057801725.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057801725.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:625273 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B23,C24,C87 |
Chr3:625277 |
T |
TG |
1bp_insertion | frameshift_variant | 1 | C73 |
Chr3:625277 |
T |
TG |
1bp_insertion | CDS_variant | 1 | C73 |
Chr3:625415 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B107,B122,C22,C26 |
Chr3:625473 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B113 |
Chr3:625507 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A4,C42,C45,C64 |
Chr3:625508 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C13 |
Chr3:625575 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B135,B5,C46 |
Chr3:625622 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C13 |
Chr3:625643 |
AT |
A |
1bp_deletion | frameshift_variant | 3 | A22,C32,C68 |
Chr3:625643 |
AT |
A |
1bp_deletion | CDS_variant | 3 | A22,C32,C68 |
Chr3:625684 |
TA |
T |
1bp_deletion | frameshift_variant | 17 | A8,B111,B136,B2,B29,B3,B53,B62,B76,C20,C32,C45,C51,C55,C86,C87,D8 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。