Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001311`

染色体: Chr01 坐标: 26065876-26072227 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001311`
名称	SmilChr01G001311
描述	stomatal closure-related actin-binding protein 1-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	26065876 - 26072227 / `+`

ID 对照

NCBI Gene ID	`LOC131016939`
GeneID	`131016939`
locus_tag	`-`
NCBI Name	`LOC131016939`
原始查询	`LOC131016939`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	stomatal closure-related actin-binding protein 1-like
产物	stomatal closure-related actin-binding protein 1-like
Arabidopsis	`AT2G26770` (SCAB1) plectin-like protein [Source:NCBI gene (formerly Entrezgene);Acc:817218] identity=74.8; qcov=0.998; evalue=0; confidence=high
Rice	`Os01g0805700` - identity=59.5; qcov=1; evalue=0; confidence=high
GO	GO:0003779 (actin binding); GO:0007015 (actin filament organization); GO:0010119 (regulation of stomatal movement)
KEGG	-
Pfam	PF16709 (SCAB-Ig); PF16711 (SCAB-ABD); PF16712 (SCAB_CC); PF17684 (SCAB-PH)
InterPro	-
eggNOG	-
NR	GeneID:131016939

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoskeleton	细胞骨架	1.00000	`XP_057801736.1`
2	Cytosol	细胞质基质	0.60000	`XP_057801736.1`
3	Nucleus	细胞核	0.00000	`XP_057801736.1`
4	Chromosome	染色体	0.00000	`XP_057801736.1`
5	Centromere	着丝粒	0.00000	`XP_057801736.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:26067258`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B66
`Chr1:26067276`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:26067398`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B119,B135,B82
`Chr1:26067760`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B138
`Chr1:26069074`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B66
`Chr1:26069359`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B124,B8
`Chr1:26070472`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B111,B113,B82,B88,C10
`Chr1:26070543`	`TC`	`T`	1bp_deletion	frameshift_variant	2	B103,C2
`Chr1:26070543`	`TC`	`T`	1bp_deletion	CDS_variant	2	B103,C2
`Chr1:26071072`	`GC`	`G`	1bp_deletion	frameshift_variant	1	D10
`Chr1:26071074`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:26071496`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B56,B96

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801736.1

494 aa

247

494

SCAB-ABD

SCAB_CC

SCAB-Ig

SCAB-PH

PF16711 SCAB-ABD 54-96 aa PF16712 SCAB_CC 101-267 aa PF16709 SCAB-Ig 281-378 aa PF17684 SCAB-PH 381-488 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801736.1`	Pfam	`PF16711`	SCAB-ABD	Domain	54	96	4.5e-23	81.6	Actin-binding domain of plant-specific actin-binding protein
`XP_057801736.1`	Pfam	`PF16712`	SCAB_CC	Family	101	267	5.6e-81	271.0	Coiled-coil regions of plant-specific actin-binding protein
`XP_057801736.1`	Pfam	`PF16709`	SCAB-Ig	Domain	281	378	9.4e-42	141.7	Ig domain of plant-specific actin-binding protein
`XP_057801736.1`	Pfam	`PF17684`	SCAB-PH	Domain	381	488	8.9e-57	190.7	PH domain of plant-specific actin-binding protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057945753.1
AACCTGCGTCATCACTCTGTTTTTGTCCTAAAAAAGTGATCTTGTAAAAGATTTCAACTTCTTTCATCAGTATAATCATTATCGTAATTTTCGTTATCTTGTAATCCATAAGCAAAGAACAAATTTTGGTCTGATGGGAAAGTAGACTTGGCCAAAAGATATGTTGGAAAGCTCTCCGGTGGCTGTGGCACTGTCTATATATATGGCCATATATATATATTGTACGTGTGTGTGTGTGTGAGCATGTAGAGTCGGAGGAT...

CDS

1 records

下载 CDS FASTA

LOC131016939
ATGACGAGGTTAACACATGATTATAGCTATACAACGCAAAAGGATGCGGTCTCTCCGGTGTCCACTGATGTATTTTTTGCCTCAAGTCGTTTCCCACATTATAAAATTGGTGCTAACAATCAAATCGTGGAGGTAAAAGAAGACGCTGAAATGTCGTCTATGAAAGACATGGTTGCACGAGAAACTGCCCTGTTGCTGGAGCAGCAGAAACGTCTTTCAGTGCGCGATCTTGCTAGCAAATTTGAGAAGGGTTTAGCTGC...

Protein

1 records

下载 Protein FASTA

XP_057801736.1
MTRLTHDYSYTTQKDAVSPVSTDVFFASSRFPHYKIGANNQIVEVKEDAEMSSMKDMVARETALLLEQQKRLSVRDLASKFEKGLAAAAKLSDEARLKEAVSLEKHVLLKKLRDALEALRGRVAGTNKDDVEEAIAMVEALAVHLTQREGELIQEKAEVKKLATFLKQASEDAKKLVDEERAFARAEIENARTAVQRVEEALQEHERMSRASGKQDLDELMKEVQEARRIKMLHQPSRVMDMEHELRALRIQLAEKSKHS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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