Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000445`

染色体: Chr03 坐标: 4778237-4782810 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000445`
名称	SmilChr03G000445
描述	protein PHOSPHATE STARVATION RESPONSE 1-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	4778237 - 4782810 / `-`

ID 对照

NCBI Gene ID	`LOC131017127`
GeneID	`131017127`
locus_tag	`-`
NCBI Name	`LOC131017127`
原始查询	`LOC131017127`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein PHOSPHATE STARVATION RESPONSE 1-like
产物	protein PHOSPHATE STARVATION RESPONSE 1-like
Arabidopsis	`AT4G28610` (PHR1) phosphate starvation response 1 [Source:NCBI gene (formerly Entrezgene);Acc:828979] identity=49; qcov=0.844; evalue=1.7e-77; confidence=high
Rice	`Os03g0329900` (PHR1) - identity=46.6; qcov=0.889; evalue=2.83e-75; confidence=high
GO	GO:0003677 (DNA binding); GO:0003700 (DNA-binding transcription factor activity)
KEGG	-
Pfam	PF00249 (Myb_DNA-binding); PF14379 (Myb_CC_LHEQLE)
InterPro	-
eggNOG	-
NR	GeneID:131017127

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057801842.1`
2	Nucleoplasm	核质	0.20000	`XP_057801842.1`
3	Chromosome	染色体	0.00000	`XP_057801843.1`
4	Centromere	着丝粒	0.00000	`XP_057801843.1`
5	Chromatin	染色质	0.00000	`XP_057801843.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:4778518`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B75,C45,D10
`Chr3:4778525`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C50
`Chr3:4778526`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B66
`Chr3:4778533`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B66
`Chr3:4778591`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B115,B81
`Chr3:4778597`	`TC`	`T`	1bp_deletion	frameshift_variant	3	B109,B37,C77
`Chr3:4778597`	`TC`	`T`	1bp_deletion	CDS_variant	3	B109,B37,C77
`Chr3:4778655`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C6
`Chr3:4778759`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A5
`Chr3:4780331`	`TCG`	`T`	2bp_deletion	frameshift_variant	11	A3,B139,B56,C14,C26,C30,C34,C61,C63,C69,D5
`Chr3:4780378`	`GC`	`G`	1bp_deletion	frameshift_variant	6	A3,B56,C17,C30,C34,C38
`Chr3:4780509`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B1,B106,B121,B30,B47

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801842.1

444 aa

222

444

Myb_DNA-binding

Myb_CC_LHEQLE

PF00249 Myb_DNA-binding 223-274 aa PF14379 Myb_CC_LHEQLE 308-352 aa

XP_057801843.1

370 aa

185

370

Myb_DNA-binding

Myb_CC_LHEQLE

PF00249 Myb_DNA-binding 149-200 aa PF14379 Myb_CC_LHEQLE 234-278 aa

XP_057801844.1

360 aa

180

360

Myb_DNA-binding

Myb_CC_LHEQLE

PF00249 Myb_DNA-binding 139-190 aa PF14379 Myb_CC_LHEQLE 224-268 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801842.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	223	274	7.7e-10	39.5	Myb-like DNA-binding domain
`XP_057801842.1`	Pfam	`PF14379`	Myb_CC_LHEQLE	Family	308	352	5e-21	74.9	MYB-CC type transfactor, LHEQLE motif
`XP_057801843.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	149	200	5.7e-10	39.9	Myb-like DNA-binding domain
`XP_057801843.1`	Pfam	`PF14379`	Myb_CC_LHEQLE	Family	234	278	3.7e-21	75.3	MYB-CC type transfactor, LHEQLE motif
`XP_057801844.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	139	190	5.4e-10	39.9	Myb-like DNA-binding domain
`XP_057801844.1`	Pfam	`PF14379`	Myb_CC_LHEQLE	Family	224	268	3.7e-21	75.3	MYB-CC type transfactor, LHEQLE motif

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057945859.1
CATATTTATTCTTCACACAATCATTAAAATCATGCATTTTGCTTCATTTGGAAAGTCAGCACTCGACAACAACATTCGCAAGTTCTTAACGTTGGATTATCGCTACAATCAATTAGTGATATTATCAATTCGTTCTCCTATTCATTGACGATTCCTTTACTTAGCCGCCGTAGTAGGATTCTCTCACCTCTCAAAAATTCCCAAAAGGTTTCTTTGGATTCTCACCTGTTTATGGAGAAAGTTGAGCATGGCACCTTCAT...

XM_057945860.1
TATTCTTCACACAATCATTAAAATCATGCATTTTGCTTCATTTGGAAAGTCAGCACTCGACAACAACATTCGCAAGTTCTTAACGTTGGATTATCGCTACAATCAATTAGTGATATTATCAATTCGTTCTCCTATTCATTGACGATTCCTTTACTTAGCCGCCGTAGTAGGATTCTCTCACCTCTCAAAAATTCCCAAAAGGTTTCTTTGGATTCTCACCTGTTTATGGAGAAAGTTGAGCATGGCACCTTCATCGTTTA...

CDS

3 records

下载 CDS FASTA

LOC131017127
ATGGCACCTTCATCGTTTAAGAAGACATATGGTGGAACACAGTCAGCTAACATGGAAGTCTCTGGAACTATGTTAGATGGCTTGGCCATGAAGAACCACGATGTCTCCTGGAATGAGATCGAGAACTTCCTCGATACTCCCCTGGAAGTCCCTGATCAGGACGGCCAAATCGAGACATCAATGGTAGCAGAAGACCACGCTAAGAAGACTAATTGGCAGGAATGGGCCGAGCAGTTGATCACAGTTAACGATGAGACACT...

LOC131017127
ATGGCACCTTCATCGTTTAAGAAGACATATGGTGGAACACAGTCAGCTAACATGGAAGTCTCTGGAACTATGGTCAAATCTTTGCACATCCTTCCTTCTCCTTTAGAAGAAAAGTTTACTCTATTGCCAGATTCACCTCAAGTTTTTTCTTCTGATTCTAGATGCCCTACTAGAATCCATTATTCCCCCAATGGAAGCGAATCAATAAGTTCGACAATATATTCGTTGTCGCCAAAAGAGGGAGATTCTTTTATGGAAAA...

Protein

3 records

下载 Protein FASTA

XP_057801842.1
MAPSSFKKTYGGTQSANMEVSGTMVKSLHILPSPLEEKFTLLPDSPQVFSSDSRCPTRIHYSPNGSESISSTIYSLSPKEGDSFMENQHPYSVMQSSQLDGLAMKNHDVSWNEIENFLDTPLEVPDQDGQIETSMVAEDHAKKTNWQEWAEQLITVNDETLNSNWSDLLIDGNLPDSEPKLLDLPHNASSHQPQIQRLQPYHVPSVNDCPALGSSTAPSSKARMRWTPELHEAFVDAVNKLGGSDRATPKGVLKIMNVEG...

XP_057801843.1
MAPSSFKKTYGGTQSANMEVSGTMLDGLAMKNHDVSWNEIENFLDTPLEVPDQDGQIETSMVAEDHAKKTNWQEWAEQLITVNDETLNSNWSDLLIDGNLPDSEPKLLDLPHNASSHQPQIQRLQPYHVPSVNDCPALGSSTAPSSKARMRWTPELHEAFVDAVNKLGGSDRATPKGVLKIMNVEGLTIYNVKSHLQKYRTARYKPESPEGTPEKKLKTASDMTSLDLKATVGITEALRLQMEVQKQLHDQLEIQRKLQI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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