Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000446`

染色体: Chr03 坐标: 4785436-4789355 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000446`
名称	SmilChr03G000446
描述	histone-lysine N-methyltransferase SUVR4-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	4785436 - 4789355 / `-`

ID 对照

NCBI Gene ID	`LOC131017129`
GeneID	`131017129`
locus_tag	`-`
NCBI Name	`LOC131017129`
原始查询	`LOC131017129`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	histone-lysine N-methyltransferase SUVR4-like
产物	histone-lysine N-methyltransferase SUVR4-like
Arabidopsis	`AT3G04380` (SUVR4) SET-domain containing protein lysine methyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:819593] identity=53.2; qcov=0.99; evalue=4.54e-174; confidence=high
Rice	`Os02g0621100` (OsSET10) - identity=63.5; qcov=0.696; evalue=5.36e-151; confidence=high
GO	GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0008270 (zinc ion binding); GO:0034968 (GO:0034968); GO:0042054 (histone methyltransferase activity)
KEGG	-
Pfam	PF00856 (SET); PF05033 (Pre-SET); PF10440 (WIYLD)
InterPro	-
eggNOG	-
NR	GeneID:131017129

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057801845.1`
2	Chromosome	染色体	0.00000	`XP_057801845.1`
3	Centromere	着丝粒	0.00000	`XP_057801845.1`
4	Chromatin	染色质	0.00000	`XP_057801845.1`
5	Telomere	端粒	0.00000	`XP_057801845.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:4785900`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr3:4787165`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C30
`Chr3:4787191`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B83,C15
`Chr3:4787321`	`T`	`TAC`	2bp_insertion	frameshift_variant	58	A1,A20,A23,A24,A25,A3,A5,B103,B104,B106,B110,B111,B115,B120,B125,B131,B134,B137,B138,B140,B17,B2,B30,B41,B42,B60,B62,B66,B78,B80,B83,B85,B90,B92,C15,C20,C24,C25,C32,C38,C41,C42,C5,C50,C51,C52,C56,C57,C59,C62,C67,C71,C80,C82,C9,D6,D8,D9
`Chr3:4787665`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B90,B92
`Chr3:4787774`	`A`	`ATG`	2bp_insertion	frameshift_variant	3	B117,C67,C80
`Chr3:4787774`	`A`	`ATG`	2bp_insertion	CDS_variant	3	B117,C67,C80
`Chr3:4787909`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B128,B70,B91
`Chr3:4787921`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B104,B105,B52,C62,C71
`Chr3:4787924`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B140,B81,B97,C39
`Chr3:4787936`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B136
`Chr3:4787947`	`TG`	`T`	1bp_deletion	frameshift_variant	1	C53

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801845.1

477 aa

238

477

WIYLD

Pre-SET

SET

PF10440 WIYLD 4-59 aa PF05033 Pre-SET 161-305 aa PF00856 SET 325-448 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801845.1`	Pfam	`PF10440`	WIYLD	Domain	4	59	1.5e-22	79.9	Ubiquitin-binding WIYLD domain
`XP_057801845.1`	Pfam	`PF05033`	Pre-SET	Family	161	305	4.5e-12	47.1	Pre-SET motif
`XP_057801845.1`	Pfam	`PF00856`	SET	Family	325	448	1.8e-21	77.3	SET domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057945862.1
AAGTGAAAAGAGCGTGCCCTTTCTCGTATTTGCTTCCGACGCGGAATTTCACCGTTTAAGGGTGTAGAGAAAAAATGGCTACAGTGGAGAAGGTTCGTAGAGCCTATAATGCGATGAAGAGCTTAGGAATAAGTGAAGAAAATGTAAAACCGGTCCTCAAACGGCTTCTGAAGTTGTACAACAAGAATTGGCAGCTTATCGAGGAAGATAACTATAGGACGCTTGCTGATGCCATCTTTGAGTATGAAGATGATAAGAAT...

CDS

1 records

下载 CDS FASTA

LOC131017129
ATGGCTACAGTGGAGAAGGTTCGTAGAGCCTATAATGCGATGAAGAGCTTAGGAATAAGTGAAGAAAATGTAAAACCGGTCCTCAAACGGCTTCTGAAGTTGTACAACAAGAATTGGCAGCTTATCGAGGAAGATAACTATAGGACGCTTGCTGATGCCATCTTTGAGTATGAAGATGATAAGAATGCTGAGGGAGAAATGGAACCTGCACTGAAGAAACAACAGAGGGGAAATGGTGAAGATAAGGTGCTGTCTAAAGA...

Protein

1 records

下载 Protein FASTA

XP_057801845.1
MATVEKVRRAYNAMKSLGISEENVKPVLKRLLKLYNKNWQLIEEDNYRTLADAIFEYEDDKNAEGEMEPALKKQQRGNGEDKVLSKDKGKRVVCEEELDDPDSRDNGNAVVPWEGQPIDHSSQAHSSHICTGSVNPSRDEATVVAKSEPKMVFNTIEDITKGSEKVKISLVDETGNEDLPHFLYFRDNVTYEAAYVHVSLARIADEDCCSDCRGDCLSPSIPCECAGSTGGEYAYTKEGLLTQDFLKTCLSAESLDMKHA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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