当前解析结果
SmilChr03G000447| 统一新 Gene ID | SmilChr03G000447 |
|---|---|
| 名称 | SmilChr03G000447 |
| 描述 | actin-related protein 3-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 4792703 - 4793744 / - |
| NCBI Gene ID | LOC131017130 |
|---|---|
| GeneID | 131017130 |
| locus_tag | - |
| NCBI Name | LOC131017130 |
| 原始查询 | LOC131017130 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | actin-related protein 3-like |
| 产物 | actin-related protein 3-like |
| Arabidopsis | AT1G13180 (DIS1)Actin-like ATPase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837876] identity=63.4; qcov=0.809; evalue=3.91e-32; confidence=medium |
| Rice | Os02g0596900 (ARP3)- identity=69.6; qcov=0.687; evalue=6.61e-34; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017130 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057801846.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057801846.1 |
| 3 | Cytosol | 细胞质基质 | 0.80000 | XP_057801846.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057801846.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057801846.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:4792816 |
AT |
A |
1bp_deletion | frameshift_variant | 3 | B101,B134,D5 |
Chr3:4792816 |
AT |
A |
1bp_deletion | CDS_variant | 3 | B101,B134,D5 |
Chr3:4792836 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | C38 |
Chr3:4792836 |
TG |
T |
1bp_deletion | CDS_variant | 1 | C38 |
Chr3:4792861 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B104,B108,B115,B81,C23 |
Chr3:4792876 |
AG |
A |
1bp_deletion | frameshift_variant | 1 | B104 |
Chr3:4792876 |
AG |
A |
1bp_deletion | CDS_variant | 1 | B104 |
Chr3:4792899 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B107,D8 |
Chr3:4792927 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B108,B115,B81,C23 |
Chr3:4792937 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B107,D8 |
Chr3:4792951 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A24,B60,C52,C74 |
Chr3:4792959 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B24 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。