当前解析结果
SmilChr03G000482| 统一新 Gene ID | SmilChr03G000482 |
|---|---|
| 名称 | SmilChr03G000482 |
| 描述 | putative disease resistance protein At1g50180 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 5127291 - 5131240 / - |
| NCBI Gene ID | LOC131017157 |
|---|---|
| GeneID | 131017157 |
| locus_tag | - |
| NCBI Name | LOC131017157 |
| 原始查询 | LOC131017157 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative disease resistance protein At1g50180 |
| 产物 | putative disease resistance protein At1g50180 |
| Arabidopsis | AT1G53350 (AT1G53350)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:841771] identity=30; qcov=1.04; evalue=1.77e-97; confidence=low |
| Rice | Os01g0547000- identity=28.3; qcov=1.01; evalue=4.29e-85; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017157 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057801870.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057801870.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057801870.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057801870.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057801870.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:5127496 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | C27 |
Chr3:5127496 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C27 |
Chr3:5127538 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B30,B36,B65,B89 |
Chr3:5127553 |
C |
CT |
1bp_insertion | frameshift_variant | 2 | B36,B89 |
Chr3:5127553 |
C |
CT |
1bp_insertion | CDS_variant | 2 | B36,B89 |
Chr3:5127562 |
G |
GT |
1bp_insertion | frameshift_variant | 11 | A23,B119,B140,B30,B58,B91,C16,C28,C46,C51,D10 |
Chr3:5127566 |
GA |
G |
1bp_deletion | frameshift_variant | 14 | A23,B119,B140,B30,B58,B91,C16,C17,C28,C33,C46,C5,C51,D10 |
Chr3:5127574 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C21 |
Chr3:5127587 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A25,B50 |
Chr3:5127599 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B140,B23,C6 |
Chr3:5127617 |
A |
ATG |
2bp_insertion | frameshift_variant | 31 | B115,B117,B19,B20,B44,B53,B57,B62,B63,B7,B70,B8,B86,B97,C1,C18,C2,C21,C26,C31,C34,C53,C63,C66,C72,C75,C77,C80,C81,C82,D9 |
Chr3:5127620 |
CAA |
C |
2bp_deletion | frameshift_variant | 31 | B115,B117,B19,B20,B44,B53,B57,B62,B63,B7,B70,B8,B86,B97,C1,C18,C2,C21,C26,C31,C34,C53,C63,C66,C72,C75,C77,C80,C81,C82,D9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057801870.1PF18052
Rx_N 6-89 aa
PF00931
NB-ARC 167-344 aa
PF23559
WHD_DRP 434-503 aa
PF23598
LRR_14 575-852 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057801870.1 |
Pfam | PF18052 |
Rx_N | Domain | 6 | 89 | 2.7e-22 | 79.4 | Rx N-terminal domain |
XP_057801870.1 |
Pfam | PF00931 |
NB-ARC | Domain | 167 | 344 | 3.4e-35 | 121.9 | NB-ARC domain |
XP_057801870.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 434 | 503 | 3e-15 | 56.7 | Disease resistance protein Winged helix domain |
XP_057801870.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 575 | 852 | 4.2e-24 | 85.7 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。