Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000483`

染色体: Chr03 坐标: 5133232-5138697 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000483`
名称	SmilChr03G000483
描述	disease resistance protein RPP13-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	5133232 - 5138697 / `-`

ID 对照

NCBI Gene ID	`LOC131017158`
GeneID	`131017158`
locus_tag	`-`
NCBI Name	`LOC131017158`
原始查询	`LOC131017158`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	disease resistance protein RPP13-like
产物	disease resistance protein RPP13-like
Arabidopsis	`AT5G35450` (AT5G35450) Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=28.7; qcov=0.633; evalue=1.18e-51; confidence=low
Rice	`Os01g0547000` - identity=26.1; qcov=0.657; evalue=6.13e-47; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131017158

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.60000	`XP_057801871.1`
2	Cell membrane	细胞膜	0.60000	`XP_057801871.1`
3	Cytoplasm	细胞质	0.40000	`XP_057801872.1`
4	Nucleus	细胞核	0.00000	`XP_057801871.1`
5	Chromosome	染色体	0.00000	`XP_057801871.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:5133390`	`A`	`AT`	1bp_insertion	frameshift_variant	8	A19,B11,B29,B32,B76,C1,C43,C49
`Chr3:5133523`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B72
`Chr3:5133540`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B134,B27,B4,C82
`Chr3:5133548`	`GGT`	`G`	2bp_deletion	frameshift_variant	56	A14,A20,A21,A7,A8,B1,B105,B109,B121,B125,B127,B128,B129,B132,B137,B20,B21,B22,B28,B41,B42,B49,B50,B53,B55,B56,B58,B69,B73,B75,B79,B8,B89,B94,C1,C10,C14,C25,C27,C32,C33,C39,C54,C56,C58,C59,C6,C63,C67,C7,C73,C76,C85,C86,C9,D3
`Chr3:5133552`	`T`	`TGA`	2bp_insertion	frameshift_variant	60	A14,A20,A21,A7,A8,B1,B105,B109,B110,B120,B121,B125,B127,B128,B129,B132,B137,B20,B21,B22,B28,B36,B41,B42,B49,B50,B53,B55,B56,B58,B69,B73,B75,B79,B8,B84,B89,B94,C1,C10,C14,C25,C27,C32,C33,C39,C54,C56,C58,C59,C6,C63,C67,C7,C73,C76,C85,C86,C9,D3
`Chr3:5133565`	`ATC`	`A`	2bp_deletion	frameshift_variant	1	C38
`Chr3:5133565`	`ATC`	`A`	2bp_deletion	CDS_variant	1	C38
`Chr3:5133581`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr3:5133592`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B112,B30,B63,B93,C16
`Chr3:5133596`	`CTT`	`C`	2bp_deletion	frameshift_variant	82	A11,A14,A2,A20,A21,A7,A8,B1,B105,B117,B120,B121,B122,B125,B127,B128,B129,B13,B132,B136,B137,B138,B139,B140,B22,B26,B28,B30,B31,B36,B42,B46,B47,B49,B50,B52,B53,B55,B56,B58,B60,B64,B69,B73,B75,B79,B8,B80,B84,B89,B90,B94,C1,C10,C13,C14,C18,C19,C2,C21,C25,C33,C39,C48,C52,C54,C56,C58,C6,C60,C62,C67,C7,C71,C74,C76,C80,C85,C86,C9,D3,D4
`Chr3:5133602`	`C`	`CAT`	2bp_insertion	frameshift_variant	83	A11,A14,A2,A20,A21,A7,A8,B1,B105,B114,B117,B120,B121,B122,B125,B127,B128,B129,B13,B132,B136,B137,B138,B139,B140,B22,B26,B28,B30,B31,B36,B42,B46,B47,B49,B50,B52,B53,B55,B56,B58,B60,B64,B69,B73,B75,B79,B8,B80,B84,B89,B90,B94,C1,C10,C13,C14,C18,C19,C2,C21,C25,C33,C39,C48,C52,C54,C56,C58,C6,C60,C62,C67,C7,C71,C74,C76,C80,C85,C86,C9,D3,D4
`Chr3:5133627`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801871.1

1178 aa

589

1178

NB-ARC

LRR_14

PF00931 NB-ARC 129-296 aa PF00931 NB-ARC 470-639 aa PF23598 LRR_14 847-1085 aa

XP_057801872.1

1155 aa

578

1155

NB-ARC

LRR_14

PF00931 NB-ARC 106-273 aa PF00931 NB-ARC 447-616 aa PF23598 LRR_14 824-1062 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801871.1`	Pfam	`PF00931`	NB-ARC	Domain	129	296	3.1e-55	187.1	NB-ARC domain
`XP_057801871.1`	Pfam	`PF00931`	NB-ARC	Domain	470	639	3.1e-55	187.1	NB-ARC domain
`XP_057801871.1`	Pfam	`PF23598`	LRR_14	Repeat	847	1085	8.8e-28	97.8	Leucine-rich repeat region
`XP_057801872.1`	Pfam	`PF00931`	NB-ARC	Domain	106	273	3.4e-55	187.0	NB-ARC domain
`XP_057801872.1`	Pfam	`PF00931`	NB-ARC	Domain	447	616	3.4e-55	187.0	NB-ARC domain
`XP_057801872.1`	Pfam	`PF23598`	LRR_14	Repeat	824	1062	8.3e-28	97.9	Leucine-rich repeat region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057945888.1
TTTAGCTTACGCTATAACAACTAAATATCTATCCTTACAAACAGTTGGTGTAAATCAAATTTTTTTCATGATACATCTGGAGCTAAATTAACACTTTTTCCTGAACTTGGAACAAGATTTTGTGGGCTTCTGCTCCAGATTGAATTTATTTTTCTCTTCTTTGATAATTTTGGTTCTTGCTTTTTGAGGAGAGAAAATTTGATGGGATCTTCCAGCAGTGCGCCAAAACGAGCTAACCGCATTCCTCAGCGAGATGATGA...

XM_057945889.1
TCTAACCTTGTGTTTCAGATGACCACGTCAACATGGCCCCGCCCCTCAACATCTATGAAAACATATTTGATCTCTCCTCGAAGAGAGATTCAATCAGTGAGATAAGGACTTGCATGCCTGAATTCAGAGTTGATGGGGCAGAGACAACATCAGAAAATGTTGGAGAAGAAGAAGACGAAGTTGATGGGGTGGAGACGTCATCAGAAAATGCTGGTGAAGAGGAAGAAGACTATGAAGATATGGGAGTTGATGGGGCGGAG...

CDS

2 records

下载 CDS FASTA

LOC131017158
ATGGGATCTTCCAGCAGTGCGCCAAAACGAGCTAACCGCATTCCTCAGCGAGATGATGACCACGTCAACATGGCCCCGCCCCTCAACATCTATGAAAACATATTTGATCTCTCCTCGAAGAGAGATTCAATCAGTGAGATAAGGACTTGCATGCCTGAATTCAGAGTTGATGGGGCAGAGACAACATCAGAAAATGTTGGAGAAGAAGAAGACGAAGTTGATGGGGTGGAGACGTCATCAGAAAATGCTGGTGAAGAGGA...

LOC131017158
ATGGCCCCGCCCCTCAACATCTATGAAAACATATTTGATCTCTCCTCGAAGAGAGATTCAATCAGTGAGATAAGGACTTGCATGCCTGAATTCAGAGTTGATGGGGCAGAGACAACATCAGAAAATGTTGGAGAAGAAGAAGACGAAGTTGATGGGGTGGAGACGTCATCAGAAAATGCTGGTGAAGAGGAAGAAGACTATGAAGATATGGGAGTTGATGGGGCGGAGACGACATCAGAAGTTGTTGGAGAAGAAGGAGA...

Protein

2 records

下载 Protein FASTA

XP_057801871.1
MGSSSSAPKRANRIPQRDDDHVNMAPPLNIYENIFDLSSKRDSISEIRTCMPEFRVDGAETTSENVGEEEDEVDGVETSSENAGEEEEDYEDMGVDGAETTSEVVGEEGDDEDKYMEELKGDICSTFWEELSTVLITGMAGIGKTTLARQVYNHPHVVAQFKGRAWVCVTGLTGKEVLMKLIRQVVYSKKLGGDSLLEKMDRRDKKSLQEMLHQHLKGKRYLIVLDDVHKEMIWESIWEGLPHEKKSSKLLLTSRSKNTR...

XP_057801872.1
MAPPLNIYENIFDLSSKRDSISEIRTCMPEFRVDGAETTSENVGEEEDEVDGVETSSENAGEEEEDYEDMGVDGAETTSEVVGEEGDDEDKYMEELKGDICSTFWEELSTVLITGMAGIGKTTLARQVYNHPHVVAQFKGRAWVCVTGLTGKEVLMKLIRQVVYSKKLGGDSLLEKMDRRDKKSLQEMLHQHLKGKRYLIVLDDVHKEMIWESIWEGLPHEKKSSKLLLTSRSKNTRRDPFSSDEMESRIHYAYRMQPLN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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