当前解析结果
SmilChr03G000502| 统一新 Gene ID | SmilChr03G000502 |
|---|---|
| 名称 | SmilChr03G000502 |
| 描述 | probable disease resistance protein At1g58602 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 5400711 - 5403219 / + |
| NCBI Gene ID | LOC131017172 |
|---|---|
| GeneID | 131017172 |
| locus_tag | - |
| NCBI Name | LOC131017172 |
| 原始查询 | LOC131017172 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable disease resistance protein At1g58602 |
| 产物 | probable disease resistance protein At1g58602 |
| Arabidopsis | AT5G35450 (AT5G35450)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=28.6; qcov=0.996; evalue=1.48e-57; confidence=low |
| Rice | Os01g0547000- identity=25.8; qcov=1; evalue=6.65e-52; confidence=low |
| GO | GO:0005515 (protein binding); GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017172 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057801887.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057801887.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057801887.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057801887.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057801887.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:5400771 |
AG |
A |
1bp_deletion | frameshift_variant | 8 | B120,B41,B53,B6,C47,C57,C62,C77 |
Chr3:5400772 |
G |
GA |
1bp_insertion | frameshift_variant | 6 | A20,B23,B8,C11,C65,D1 |
Chr3:5400792 |
CTA |
C |
2bp_deletion | frameshift_variant | 11 | B114,B20,B25,B93,C15,C41,C46,C52,C53,C81,C84 |
Chr3:5400853 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A22,C27 |
Chr3:5400958 |
AT |
A |
1bp_deletion | frameshift_variant | 59 | A10,A14,A2,A20,A6,B10,B102,B103,B106,B112,B117,B122,B126,B129,B131,B138,B139,B140,B15,B17,B18,B26,B32,B33,B36,B37,B4,B42,B45,B5,B54,B59,B62,B63,B73,B78,B90,B95,C24,C25,C27,C35,C39,C4,C40,C49,C59,C68,C72,C73,C8,C82,C83,D1,D10,D11,D2,D4,D8 |
Chr3:5400965 |
TA |
T |
1bp_deletion | frameshift_variant | 70 | A10,A14,A16,A19,A2,A20,A6,B10,B102,B103,B106,B112,B117,B122,B126,B128,B129,B131,B138,B139,B140,B15,B17,B18,B19,B26,B32,B33,B36,B37,B4,B42,B45,B5,B52,B54,B59,B62,B63,B73,B78,B88,B90,B95,C24,C25,C27,C35,C39,C4,C40,C49,C54,C55,C59,C65,C68,C71,C72,C73,C74,C8,C82,C83,D1,D10,D11,D2,D4,D8 |
Chr3:5401044 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A18 |
Chr3:5401045 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C87 |
Chr3:5401061 |
A |
AAC |
2bp_insertion | frameshift_variant | 4 | B12,B68,C72,D2 |
Chr3:5401061 |
A |
AAC |
2bp_insertion | CDS_variant | 4 | B12,B68,C72,D2 |
Chr3:5401066 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A2,D11 |
Chr3:5401124 |
T |
TAC |
2bp_insertion | frameshift_variant | 19 | B11,B12,B21,B25,B55,B59,B68,B72,B97,C25,C3,C31,C35,C40,C72,C83,C87,D2,D8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057801887.1PF00931
NB-ARC 73-229 aa
PF23598
LRR_14 430-701 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057801887.1 |
Pfam | PF00931 |
NB-ARC | Domain | 73 | 229 | 1.7e-26 | 93.6 | NB-ARC domain |
XP_057801887.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 430 | 701 | 6.3e-29 | 101.6 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。