Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000508`

染色体: Chr03 坐标: 5483749-5488480 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000508`
名称	SmilChr03G000508
描述	probable disease resistance protein At1g58602
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	5483749 - 5488480 / `+`

ID 对照

NCBI Gene ID	`LOC131017178`
GeneID	`131017178`
locus_tag	`-`
NCBI Name	`LOC131017178`
原始查询	`LOC131017178`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable disease resistance protein At1g58602
产物	probable disease resistance protein At1g58602
Arabidopsis	`AT5G35450` (AT5G35450) Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=27.2; qcov=1.08; evalue=3.36e-64; confidence=low
Rice	`Os01g0547000` - identity=25.8; qcov=0.929; evalue=9.69e-55; confidence=low
GO	GO:0005515 (protein binding); GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131017178

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.60000	`XP_057801893.1`
2	Cytoplasm	细胞质	0.40000	`XP_057801893.1`
3	Cytosol	细胞质基质	0.40000	`XP_057801893.1`
4	Nucleus	细胞核	0.00000	`XP_057801893.1`
5	Chromosome	染色体	0.00000	`XP_057801893.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:5485757`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C70
`Chr3:5485799`	`A`	`AG`	1bp_insertion	frameshift_variant	3	B95,C7,C70
`Chr3:5485799`	`A`	`AG`	1bp_insertion	CDS_variant	3	B95,C7,C70
`Chr3:5485813`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B95,C7,C70
`Chr3:5485822`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B17
`Chr3:5485824`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C39,C41,C62
`Chr3:5485840`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B123,B17,C41
`Chr3:5485880`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A24
`Chr3:5485888`	`AC`	`A`	1bp_deletion	frameshift_variant	7	B95,C35,C38,C54,C59,C7,C70
`Chr3:5485892`	`CA`	`C`	1bp_deletion	frameshift_variant	7	B95,C35,C38,C54,C59,C7,C70
`Chr3:5485895`	`G`	`GCA`	2bp_insertion	frameshift_variant	7	B95,C35,C38,C54,C59,C7,C70
`Chr3:5485901`	`TA`	`T`	1bp_deletion	frameshift_variant	7	B95,C35,C38,C54,C59,C7,C70

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801893.1

843 aa

422

843

NB-ARC

LRR_14

PF00931 NB-ARC 154-313 aa PF23598 LRR_14 523-821 aa

XP_057801894.1

828 aa

414

828

NB-ARC

LRR_14

PF00931 NB-ARC 139-298 aa PF23598 LRR_14 508-806 aa

XP_057801895.1

828 aa

414

828

NB-ARC

LRR_14

PF00931 NB-ARC 139-298 aa PF23598 LRR_14 508-806 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801893.1`	Pfam	`PF00931`	NB-ARC	Domain	154	313	6.2e-30	104.7	NB-ARC domain
`XP_057801893.1`	Pfam	`PF23598`	LRR_14	Repeat	523	821	1.8e-28	100.1	Leucine-rich repeat region
`XP_057801894.1`	Pfam	`PF00931`	NB-ARC	Domain	139	298	6.1e-30	104.8	NB-ARC domain
`XP_057801894.1`	Pfam	`PF23598`	LRR_14	Repeat	508	806	1.7e-28	100.1	Leucine-rich repeat region
`XP_057801895.1`	Pfam	`PF00931`	NB-ARC	Domain	139	298	6.1e-30	104.8	NB-ARC domain
`XP_057801895.1`	Pfam	`PF23598`	LRR_14	Repeat	508	806	1.7e-28	100.1	Leucine-rich repeat region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057945910.1
GCTGCAGATGCTCTAAGTCTGAATAATTAAATAATTTGGGATAACCTATGTGTTTAGTGCCCTACATTATTAATAAAGAGGGCTCGAGATAAAACTAAAATCATTTCTTATTTCACTATTCCTCTTTGAAAAACAAGTTCATCTCACCCGTGGGATAAGTTAAATTTAGTGATATAGTAACTATTCATTGTAGTGTATTATTTATTTGACATATATTAATCAGTCTATTTCTAAACATGAATATCAAACAAGTGCTTATT...

XM_057945911.1
GCTGCAGATGCTCTAAGTCTGAATAATTAAATAATTTGGGATAACCTATGTGTTTAGTGCCCTACATTATTAATAAAGAGGGCTCGAGATAAAACTAAAATCATTTCTTATTTCACTATTCCTCTTTGAAAAACAAGTTCATCTCACCCGTGGGATAAGTTAAATTTAGTGATATAGTAACTATTCATTGTAGTGTATTATTTATTTGACATATATTAATCAGTCTATTTCTAAACATGAATATCAAACAAGTGCTTATT...

CDS

3 records

下载 CDS FASTA

LOC131017178
ATGATGTTAAATTGCCTATTAGGGCAGTTTGGTTCAAGCAGAAACATGTCGGAGGCTCTCCTCTTATCGGTGATACAGAAGCTAGACATTAATTATGGAGATGACACGAAAACAAAGGAGATTATAAAAGAGCAAATGGAAAGGGTAATTAAAGATATGAGAGAGATTGTGGATATTGTGAGGGATAAGAAATTGGAAGAGGGGAGAAGCCTAAATTTTTTGGTATCTGACCTTGTCGACATGGCTGACGATGCTCTCGA...

LOC131017178
ATGTCGGAGGCTCTCCTCTTATCGGTGATACAGAAGCTAGACATTAATTATGGAGATGACACGAAAACAAAGGAGATTATAAAAGAGCAAATGGAAAGGGTAATTAAAGATATGAGAGAGATTGTGGATATTGTGAGGGATAAGAAATTGGAAGAGGGGAGAAGCCTAAATTTTTTGGTATCTGACCTTGTCGACATGGCTGACGATGCTCTCGACCTTTGCAAACAACACGTAACATATTATAGAGACTATGAGTCCAT...

Protein

3 records

下载 Protein FASTA

XP_057801893.1
MMLNCLLGQFGSSRNMSEALLLSVIQKLDINYGDDTKTKEIIKEQMERVIKDMREIVDIVRDKKLEEGRSLNFLVSDLVDMADDALDLCKQHVTYYRDYESIHSWIGEIKKQMLKLGDNGVETESNIRSSENVDAVGLEEDVQMLLRKRIIGGEDDLKTILIKGMCGSGKTTLAREIYNHATVIERFEHRAWVSNSTYFTLKELLFKLIQQVDPQNLHTSSLLENMDNRRLRDMLCQHLQGTRYFIVLDDMPKQMHLESF...

XP_057801894.1
MSEALLLSVIQKLDINYGDDTKTKEIIKEQMERVIKDMREIVDIVRDKKLEEGRSLNFLVSDLVDMADDALDLCKQHVTYYRDYESIHSWIGEIKKQMLKLGDNGVETESNIRSSENVDAVGLEEDVQMLLRKRIIGGEDDLKTILIKGMCGSGKTTLAREIYNHATVIERFEHRAWVSNSTYFTLKELLFKLIQQVDPQNLHTSSLLENMDNRRLRDMLCQHLQGTRYFIVLDDMPKQMHLESFLEALPDEDNRSRLLL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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