当前解析结果
SmilChr03G000545| 统一新 Gene ID | SmilChr03G000545 |
|---|---|
| 名称 | SmilChr03G000545 |
| 描述 | disease resistance protein RPP8-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 5917090 - 5926185 / + |
| NCBI Gene ID | LOC131017202 |
|---|---|
| GeneID | 131017202 |
| locus_tag | - |
| NCBI Name | LOC131017202 |
| 原始查询 | LOC131017202 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | disease resistance protein RPP8-like |
| 产物 | disease resistance protein RPP8-like |
| Arabidopsis | AT5G43470 (RPP8)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:834367] identity=30.2; qcov=1.03; evalue=1.77e-100; confidence=low |
| Rice | Os01g0547000- identity=27.8; qcov=1.05; evalue=7.89e-86; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14); PF24883 (NPHP3_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017202 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057801920.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057801920.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057801920.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057801920.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057801920.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:5917259 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C53,D2 |
Chr3:5917270 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr3:5917277 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C30 |
Chr3:5917288 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B120,B79,B85,C53 |
Chr3:5917297 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C53 |
Chr3:5917352 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A3,B103,B39 |
Chr3:5917404 |
CG |
C |
1bp_deletion | frameshift_variant | 8 | B140,B81,B87,C12,C19,C86,D7,D9 |
Chr3:5917484 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B128,C70,C80 |
Chr3:5917486 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B23,B50 |
Chr3:5917517 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C55,C74 |
Chr3:5917526 |
CA |
C |
1bp_deletion | frameshift_variant | 1 | A25 |
Chr3:5917526 |
CA |
C |
1bp_deletion | CDS_variant | 1 | A25 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057801920.1PF18052
Rx_N 6-90 aa
PF00931
NB-ARC 169-351 aa
PF24883
NPHP3_N 185-320 aa
PF23559
WHD_DRP 440-510 aa
PF23598
LRR_14 688-856 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057801920.1 |
Pfam | PF18052 |
Rx_N | Domain | 6 | 90 | 9.6e-23 | 80.8 | Rx N-terminal domain |
XP_057801920.1 |
Pfam | PF00931 |
NB-ARC | Domain | 169 | 351 | 4.3e-33 | 115.0 | NB-ARC domain |
XP_057801920.1 |
Pfam | PF24883 |
NPHP3_N | Domain | 185 | 320 | 6.4e-06 | 27.2 | Nephrocystin 3, N-terminal |
XP_057801920.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 440 | 510 | 7.1e-17 | 61.9 | Disease resistance protein Winged helix domain |
XP_057801920.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 688 | 856 | 2.2e-22 | 80.0 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。