当前解析结果
SmilChr03G000540| 统一新 Gene ID | SmilChr03G000540 |
|---|---|
| 名称 | SmilChr03G000540 |
| 描述 | uncharacterized SmilChr03G000540 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 5867768 - 5915015 / + |
| NCBI Gene ID | LOC131017211 |
|---|---|
| GeneID | 131017211 |
| locus_tag | - |
| NCBI Name | LOC131017211 |
| 原始查询 | LOC131017211 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Nucleic acid-binding, OB-fold-like protein [Source:NCBI gene (formerly Entrezgene);Acc:833880]; symbol=AT5G38890; hit=AT5G38890; species=arabidopsis; confidence=high |
| 产物 | Nucleic acid-binding, OB-fold-like protein [Source:NCBI gene (formerly Entrezgene);Acc:833880]; symbol=AT5G38890; hit=AT5G38890; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G38890 (AT5G38890)Nucleic acid-binding, OB-fold-like protein [Source:NCBI gene (formerly Entrezgene);Acc:833880] identity=70; qcov=0.936; evalue=2.08e-75; confidence=high |
| Rice | Os02g0815800- identity=69.6; qcov=0.924; evalue=1.25e-73; confidence=high |
| GO | GO:0000176 (nuclear exosome (RNase complex)); GO:0003723 (RNA binding); GO:0005737 (cytoplasm); GO:0006396 (RNA processing) |
| KEGG | smil03018 (RNA degradation - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF10447 (EXOSC1); PF14382 (ECR1_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017211 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057801931.1 |
| 2 | Nucleolus | 核仁 | 1.00000 | XP_057801931.1 |
| 3 | Cytoplasm | 细胞质 | 0.60000 | XP_057801931.1 |
| 4 | Nucleolar fibrillar center | Nucleolar fibrillar center | 0.40000 | XP_057801931.1 |
| 5 | Cytosol | 细胞质基质 | 0.40000 | XP_057801932.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:5867961 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A5,B11 |
Chr3:5868026 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B29,C86 |
Chr3:5868057 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A1,B94,C37 |
Chr3:5869175 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C22 |
Chr3:5869201 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B126,B47,B81,C86 |
Chr3:5869674 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr3:5869737 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B120,B129,B62,B79 |
Chr3:5870002 |
C |
CT |
1bp_insertion | frameshift_variant | 4 | B126,B85,C23,C65 |
Chr3:5870002 |
C |
CT |
1bp_insertion | CDS_variant | 4 | B126,B85,C23,C65 |
Chr3:5870014 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C10 |
Chr3:5870033 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C30 |
Chr3:5872920 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C27 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057801931.1PF14382
ECR1_N 9-46 aa
PF10447
EXOSC1 101-143 aa
XP_057801932.1PF14382
ECR1_N 9-46 aa
PF10447
EXOSC1 101-143 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057801931.1 |
Pfam | PF14382 |
ECR1_N | Domain | 9 | 46 | 3.4e-08 | 33.8 | Exosome complex exonuclease RRP4 N-terminal region |
XP_057801931.1 |
Pfam | PF10447 |
EXOSC1 | Domain | 101 | 143 | 1.4e-15 | 58.7 | Exosome component EXOSC1/CSL4 |
XP_057801932.1 |
Pfam | PF14382 |
ECR1_N | Domain | 9 | 46 | 2.7e-08 | 34.2 | Exosome complex exonuclease RRP4 N-terminal region |
XP_057801932.1 |
Pfam | PF10447 |
EXOSC1 | Domain | 101 | 143 | 8.8e-16 | 59.3 | Exosome component EXOSC1/CSL4 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。