Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000572`

染色体: Chr03 坐标: 6229919-6232020 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000572`
名称	SmilChr03G000572
描述	uncharacterized SmilChr03G000572
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	6229919 - 6232020 / `-`

ID 对照

NCBI Gene ID	`LOC131017231`
GeneID	`131017231`
locus_tag	`-`
NCBI Name	`LOC131017231`
原始查询	`LOC131017231`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述	proline-rich spliceosome-associated (PSP) family protein [Source:NCBI gene (formerly Entrezgene);Acc:828253]; symbol=AT4G21660; hit=AT4G21660; species=arabidopsis; confidence=high
产物	proline-rich spliceosome-associated (PSP) family protein [Source:NCBI gene (formerly Entrezgene);Acc:828253]; symbol=AT4G21660; hit=AT4G21660; species=arabidopsis; confidence=high
Arabidopsis	`AT4G21660` (AT4G21660) proline-rich spliceosome-associated (PSP) family protein [Source:NCBI gene (formerly Entrezgene);Acc:828253] identity=82.6; qcov=0.698; evalue=2.67e-56; confidence=high
Rice	`Os02g0827300` - identity=76.6; qcov=0.725; evalue=6.24e-52; confidence=high
GO	GO:0000398 (mRNA splicing, via spliceosome); GO:0005684 (U2-type spliceosomal complex); GO:0005686 (U2 snRNP); GO:0005689 (U12-type spliceosomal complex); GO:0071011 (precatalytic spliceosome); GO:0071013 (catalytic step 2 spliceosome)
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:131017231

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057801943.1`
2	Cytoplasm	细胞质	1.00000	`XP_057801943.1`
3	Nucleoplasm	核质	0.80000	`XP_057801943.1`
4	Cytosol	细胞质基质	0.80000	`XP_057801943.1`
5	Chromosome	染色体	0.00000	`XP_057801943.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:6230111`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B122,B6,C33
`Chr3:6230131`	`TGA`	`T`	2bp_deletion	frameshift_variant	4	B7,B89,C30,D5
`Chr3:6230131`	`TGA`	`T`	2bp_deletion	CDS_variant	4	B7,B89,C30,D5
`Chr3:6230155`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B125,B135,D9
`Chr3:6230171`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B34
`Chr3:6230288`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C3
`Chr3:6230344`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C65
`Chr3:6230559`	`TCC`	`T`	2bp_deletion	frameshift_variant	1	C61
`Chr3:6230559`	`TCC`	`T`	2bp_deletion	CDS_variant	1	C61
`Chr3:6230579`	`AC`	`A`	1bp_deletion	frameshift_variant	1	B123
`Chr3:6230579`	`AC`	`A`	1bp_deletion	CDS_variant	1	B123
`Chr3:6230737`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	A4

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057945960.1
GTGACGAAAGTCTGCTGCTGAGGATATTTGCATCTTCTCCCCCTTTTTTTTCCTTTGAAATTATTTTCTTAGCCACAATTTCCCCATCTGGCAGAGATATACAAAACCAGCTCCTGTAATAATGAGGAATTTTGGCTTCTTGTTCATATTGTTGATTGGGGCAGCTGCTTTCTTATACCTTAGTTTTCCCAGCAAGGAAAGAGCTATCATCAATCCAGGTATGGTTTCAATAGGCGGCATGAATGATATGGCTTTGATGA...

CDS

1 records

下载 CDS FASTA

LOC131017231
ATGATAAGTTTTATGGTTGTGTTATTGACCACCTGCACAGCAGCAAAACTTTTTTCCCAATATTCTTGTTTTTGGCTTGATGCACCTTCTTATCCTCATTTAAAAATCCCTGGCCTTAATGCACCAATCCCCGCTGGAGCTAAATTTGGCTATGGGCATGGAGAATGGGGCAAACCACCTGTTGATGAATATGGACGTCCCCTCTATGGAGATGTTTTCGGCTTTGTGCAACAAGAACAGCCCAATTATGAGGAAGAACC...

Protein

1 records

下载 Protein FASTA

XP_057801943.1
MISFMVVLLTTCTAAKLFSQYSCFWLDAPSYPHLKIPGLNAPIPAGAKFGYGHGEWGKPPVDEYGRPLYGDVFGFVQQEQPNYEEEPVDKTKHWGDLEEEEEEEEEEEEEEEQMAEEELEDGIQSVDSLSSTPTGVETPDVIDLRKQQRKEPDRPLYQVASLLDYVFLSTFYACWIIDSFQVQEILPEV

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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