Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000634`

染色体: Chr03 坐标: 6981635-6982766 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000634`
名称	SmilChr03G000634
描述	F-box/kelch-repeat protein At3g23880-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	6981635 - 6982766 / `-`

ID 对照

NCBI Gene ID	`LOC131017273`
GeneID	`131017273`
locus_tag	`-`
NCBI Name	`LOC131017273`
原始查询	`LOC131017273`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box/kelch-repeat protein At3g23880-like
产物	F-box/kelch-repeat protein At3g23880-like
Arabidopsis	`AT3G06240` (AT3G06240) F-box family protein [Source:NCBI gene (formerly Entrezgene);Acc:819798] identity=29.3; qcov=1.23; evalue=9.12e-30; confidence=low
Rice	`Os09g0517800` (OsFbox499) - identity=27.9; qcov=0.838; evalue=7.9e-14; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF03478 (Beta-prop_KIB1-4); PF07734 (FBA_1); PF08268 (FBA_3); PF12937 (F-box-like)
InterPro	-
eggNOG	-
NR	GeneID:131017273

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.80000	`XP_057801984.1`
2	Cytoplasm	细胞质	0.80000	`XP_057801984.1`
3	Cytosol	细胞质基质	0.20000	`XP_057801984.1`
4	Chromosome	染色体	0.00000	`XP_057801984.1`
5	Centromere	着丝粒	0.00000	`XP_057801984.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:6981781`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B11,B126,C55,C63,C69
`Chr3:6981793`	`AC`	`A`	1bp_deletion	frameshift_variant	6	B127,B37,B63,B95,C54,C9
`Chr3:6981883`	`C`	`T`	EMS_canonical_SNV	stop_gained	4	A11,B123,C14,C28
`Chr3:6981883`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A11,B123,C14,C28
`Chr3:6982067`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C68
`Chr3:6982178`	`T`	`TCC`	2bp_insertion	frameshift_variant	83	A10,A11,A14,A15,A19,A21,A23,A3,A5,A7,B100,B102,B106,B11,B117,B119,B12,B124,B128,B136,B138,B20,B3,B32,B33,B42,B44,B45,B46,B49,B59,B60,B61,B65,B66,B67,B69,B75,B78,B81,B84,B85,B9,B93,B97,C1,C10,C11,C12,C14,C16,C17,C19,C2,C26,C27,C28,C3,C33,C35,C40,C44,C46,C48,C49,C51,C52,C53,C54,C57,C6,C63,C71,C73,C74,C75,C78,C81,C9,D1,D2,D3,D4
`Chr3:6982180`	`ATG`	`A`	2bp_deletion	frameshift_variant	84	A10,A11,A14,A15,A19,A21,A23,A3,A5,A7,B100,B102,B106,B11,B117,B119,B12,B124,B128,B136,B138,B20,B3,B32,B33,B42,B44,B45,B46,B49,B59,B60,B61,B65,B66,B67,B69,B75,B78,B81,B84,B85,B9,B93,B97,C1,C10,C11,C12,C14,C16,C17,C19,C2,C20,C26,C27,C28,C3,C33,C35,C40,C44,C46,C48,C49,C51,C52,C53,C54,C57,C6,C63,C71,C73,C74,C75,C78,C81,C9,D1,D2,D3,D4
`Chr3:6982254`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A16,B127,B13
`Chr3:6982332`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B136
`Chr3:6982361`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B129
`Chr3:6982381`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr3:6982397`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C87

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801984.1

334 aa

167

334

F-box

F-box-like

FBA_1

FBA_3

Beta-prop_KIB1-4

PF00646 F-box 11-50 aa PF12937 F-box-like 12-47 aa PF07734 FBA_1 80-269 aa PF08268 FBA_3 82-267 aa PF03478 Beta-prop_KIB1-4 84-259 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801984.1`	Pfam	`PF00646`	F-box	Domain	11	50	1.3e-12	47.8	F-box domain
`XP_057801984.1`	Pfam	`PF12937`	F-box-like	Domain	12	47	7.1e-09	36.0	F-box-like
`XP_057801984.1`	Pfam	`PF07734`	FBA_1	Repeat	80	269	2.1e-19	70.4	F-box associated beta propeller domain
`XP_057801984.1`	Pfam	`PF08268`	FBA_3	Repeat	82	267	1.6e-19	70.8	F-box associated beta propeller domain
`XP_057801984.1`	Pfam	`PF03478`	Beta-prop_KIB1-4	Repeat	84	259	8.7e-07	29.4	KIB1-4 beta-propeller

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057946001.1
CAATGGATAGCAAACGCAGCAAACTATCTCTCCTTTTTCTTCCTCAAGAAATCATCGAAGAAATACTGTCAAGACTTGCGGTGAAATCACTCTTGAGATTCAGGTGCGTTTCAAAGTCATGGCGCTCTTTGATTGGCAGCGAACGATTCATCAAAACCCACCTCCAAAATTCATCAAAAAACGCAGCTCTTGCCCATCACAGGAAGATTCTTTCCTATGATTCTCCCAAATTTGTAAATTGGTGGGAGTTCGCTGATATG...

CDS

1 records

下载 CDS FASTA

LOC131017273
ATGGATAGCAAACGCAGCAAACTATCTCTCCTTTTTCTTCCTCAAGAAATCATCGAAGAAATACTGTCAAGACTTGCGGTGAAATCACTCTTGAGATTCAGGTGCGTTTCAAAGTCATGGCGCTCTTTGATTGGCAGCGAACGATTCATCAAAACCCACCTCCAAAATTCATCAAAAAACGCAGCTCTTGCCCATCACAGGAAGATTCTTTCCTATGATTCTCCCAAATTTGTAAATTGGTGGGAGTTCGCTGATATGGT...

Protein

1 records

下载 Protein FASTA

XP_057801984.1
MDSKRSKLSLLFLPQEIIEEILSRLAVKSLLRFRCVSKSWRSLIGSERFIKTHLQNSSKNAALAHHRKILSYDSPKFVNWWEFADMVGCCNGLVCFLQKRSFFLWNPATGISNKLPEIVIENGDRTSFVYKYGFGWDESSGAYKVFAVFASRLHESMCKVYSSKTNSWKIVEDWEDDNVCGAGQFASGKLHWHYHEGTGGMNIVTFDLKSEEFGKMEVPCPCDSRVWLGVLEGRLCVFSYNKRTHFDAWVMKEDSWVKVM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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