Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G000675

染色体: Chr03 坐标: 7546223-7548784 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G000675
名称SmilChr03G000675
描述cysteine-rich receptor-like protein kinase 44
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向7546223 - 7548784 / -

ID 对照

NCBI Gene IDLOC131017277
GeneID131017277
locus_tag-
NCBI NameLOC131017277
原始查询LOC131017277

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述cysteine-rich receptor-like protein kinase 44
产物cysteine-rich receptor-like protein kinase 44
ArabidopsisAT4G05200 (CRK25)
cysteine-rich RLK (RECEPTOR-like protein kinase) 25 [Source:NCBI gene (formerly Entrezgene);Acc:825868]
identity=47; qcov=0.946; evalue=0; confidence=high
RiceOs07g0537500
-
identity=43.3; qcov=0.946; evalue=1.52e-161; confidence=medium
GOGO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG-
PfamPF00069 (Pkinase); PF01657 (Stress-antifung); PF07714 (PK_Tyr_Ser-Thr)
InterPro-
eggNOG-
NRGeneID:131017277

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057801987.1
2 Nucleus 细胞核 0.00000 XP_057801987.1
3 Chromosome 染色体 0.00000 XP_057801987.1
4 Centromere 着丝粒 0.00000 XP_057801987.1
5 Chromatin 染色质 0.00000 XP_057801987.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:7546453 C T EMS_canonical_SNV CDS_variant 3 A14,B15,D11
Chr3:7546456 C T EMS_canonical_SNV stop_gained 12 A25,B10,B121,B130,B132,B16,B32,B50,B74,C22,C29,C40
Chr3:7546468 G A EMS_canonical_SNV CDS_variant 2 A9,C14
Chr3:7546520 C T EMS_canonical_SNV CDS_variant 2 A6,B10
Chr3:7546563 C T EMS_canonical_SNV CDS_variant 1 B10
Chr3:7546624 TC T 1bp_deletion frameshift_variant 51 A10,A14,A19,A22,A23,A7,B103,B112,B115,B12,B131,B138,B15,B17,B19,B20,B24,B35,B43,B49,B52,B58,B68,B72,B73,B78,B84,B85,B89,B91,C15,C16,C3,C31,C34,C35,C40,C46,C52,C62,C63,C67,C72,C73,C84,C86,C9,D1,D11,D2,D5
Chr3:7546638 GC G 1bp_deletion frameshift_variant 51 A10,A14,A19,A22,A23,A7,B103,B112,B115,B12,B131,B138,B15,B17,B19,B20,B24,B35,B43,B49,B52,B58,B68,B72,B73,B78,B84,B85,B89,B91,C15,C16,C3,C31,C34,C35,C40,C46,C52,C62,C63,C67,C72,C73,C84,C86,C9,D1,D11,D2,D5
Chr3:7546642 TC T 1bp_deletion frameshift_variant 51 A10,A14,A19,A22,A23,A7,B103,B112,B115,B12,B131,B138,B15,B17,B19,B20,B24,B35,B43,B49,B52,B58,B68,B72,B73,B78,B84,B85,B89,B91,C15,C16,C3,C31,C34,C35,C40,C46,C52,C62,C63,C67,C72,C73,C84,C86,C9,D1,D11,D2,D5
Chr3:7546685 G A EMS_canonical_SNV stop_gained 53 A10,A14,A18,A19,A22,A23,A7,B103,B112,B115,B12,B131,B138,B15,B17,B19,B20,B24,B35,B43,B49,B52,B58,B68,B72,B73,B78,B84,B85,B89,B91,C15,C16,C3,C31,C34,C35,C40,C46,C52,C62,C63,C67,C72,C73,C84,C86,C9,D1,D11,D2,D4,D5
Chr3:7547138 C CT 1bp_insertion frameshift_variant 1 B10
Chr3:7547138 C CT 1bp_insertion CDS_variant 1 B10
Chr3:7547185 C T EMS_canonical_SNV CDS_variant 5 B104,C45,C56,C65,D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057801987.1
645 aa
N
1
322
645
Stress-antifung
Stress-antifung
Pkinase
PK_Tyr_Ser-Thr
C
PF01657 Stress-antifung 28-122 aa PF01657 Stress-antifung 146-236 aa PF00069 Pkinase 323-589 aa PF07714 PK_Tyr_Ser-Thr 324-536 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057801987.1 Pfam PF01657 Stress-antifung Family 28 122 9.6e-36 123.1 Salt stress response/antifungal
XP_057801987.1 Pfam PF01657 Stress-antifung Family 146 236 9.6e-36 123.1 Salt stress response/antifungal
XP_057801987.1 Pfam PF00069 Pkinase Domain 323 589 4.9e-46 158.0 Protein kinase domain
XP_057801987.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 324 536 1.4e-48 166.2 Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057946004.1
TCCTCGGAAAAATGTGGGAGATTCGAAGAAACTGGATAATTGTCTCCCTCAGCATTCTGTTGCACGTTTCTCTAGTGACGTCCCAGCCAAATTGCACCGTGAGCGGTGACACATTCGCAAACGACAGCACTTACGAGACCAATCTCAACACCCTGGTGGCCTCTCTCTCCTCCACCATCGGCAACAGCGGATTCCTCAACGCCTCCGTCGGCCAGAGCCCCGACACCGTCAACGCCATCGTCCTCTGCAGAGGAGACATC...

CDS

1 records

下载 CDS FASTA
LOC131017277
ATGTGGGAGATTCGAAGAAACTGGATAATTGTCTCCCTCAGCATTCTGTTGCACGTTTCTCTAGTGACGTCCCAGCCAAATTGCACCGTGAGCGGTGACACATTCGCAAACGACAGCACTTACGAGACCAATCTCAACACCCTGGTGGCCTCTCTCTCCTCCACCATCGGCAACAGCGGATTCCTCAACGCCTCCGTCGGCCAGAGCCCCGACACCGTCAACGCCATCGTCCTCTGCAGAGGAGACATCTCGCTCCCAGC...

Protein

1 records

下载 Protein FASTA
XP_057801987.1
MWEIRRNWIIVSLSILLHVSLVTSQPNCTVSGDTFANDSTYETNLNTLVASLSSTIGNSGFLNASVGQSPDTVNAIVLCRGDISLPACRECVAATAPATAQRCPNRKDAIFWNETCMVRYSSRPIFGVLQIQPVSQVKSTIRAPNPQRHDEELRALLESLRGFAANGGPLKKVAAGNTTAPDVQPIYALEQCTPDLSVRDCTDCLTRAIDDIPTCCSGIIGSGILRPSCTLRFEDYQFYNDSMLQLPQQPITREKPSNKT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器