当前解析结果
SmilChr03G000678| 统一新 Gene ID | SmilChr03G000678 |
|---|---|
| 名称 | SmilChr03G000678 |
| 描述 | uncharacterized SmilChr03G000678 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 7562402 - 7566253 / + |
| NCBI Gene ID | LOC131017283 |
|---|---|
| GeneID | 131017283 |
| locus_tag | - |
| NCBI Name | LOC131017283 |
| 原始查询 | LOC131017283 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | TraB family protein [Source:NCBI gene (formerly Entrezgene);Acc:837027]; symbol=AT1G05270; hit=AT1G05270; species=arabidopsis; confidence=medium |
| 产物 | TraB family protein [Source:NCBI gene (formerly Entrezgene);Acc:837027]; symbol=AT1G05270; hit=AT1G05270; species=arabidopsis; confidence=medium |
| Arabidopsis | AT1G05270 (AT1G05270)TraB family protein [Source:NCBI gene (formerly Entrezgene);Acc:837027] identity=44.1; qcov=0.796; evalue=3.11e-47; confidence=medium |
| Rice | Os05g0499500- identity=38.5; qcov=0.816; evalue=3.1e-40; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017283 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 0.80000 | XP_057801991.1 |
| 2 | Mitochondrion | 线粒体 | 0.60000 | XP_057801991.1 |
| 3 | Chloroplast membrane | 叶绿体膜 | 0.20000 | XP_057801991.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057801991.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057801991.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:7562408 |
ATG |
A |
2bp_deletion | frameshift_variant | 1 | C59 |
Chr3:7562408 |
ATG |
A |
2bp_deletion | CDS_variant | 1 | C59 |
Chr3:7562448 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A10,C22 |
Chr3:7562461 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C44 |
Chr3:7562490 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C44,C80 |
Chr3:7562509 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C44,C80 |
Chr3:7562549 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C44,C80 |
Chr3:7562785 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B49 |
Chr3:7562804 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A1,B59,B94,C12,C37 |
Chr3:7562967 |
G |
GA |
1bp_insertion | frameshift_variant | 2 | C55,D8 |
Chr3:7562967 |
G |
GA |
1bp_insertion | CDS_variant | 2 | C55,D8 |
Chr3:7563085 |
G |
GA |
1bp_insertion | frameshift_variant | 1 | C39 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。