Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000684`

染色体: Chr03 坐标: 7635232-7652488 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000684`
名称	SmilChr03G000684
描述	uncharacterized SmilChr03G000684
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	7635232 - 7652488 / `+`

ID 对照

NCBI Gene ID	`LOC131017311`
GeneID	`131017311`
locus_tag	`-`
NCBI Name	`LOC131017311`
原始查询	`LOC131017311`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	TraB family protein [Source:NCBI gene (formerly Entrezgene);Acc:837027]; symbol=AT1G05270; hit=AT1G05270; species=arabidopsis; confidence=medium
产物	TraB family protein [Source:NCBI gene (formerly Entrezgene);Acc:837027]; symbol=AT1G05270; hit=AT1G05270; species=arabidopsis; confidence=medium
Arabidopsis	`AT1G05270` (AT1G05270) TraB family protein [Source:NCBI gene (formerly Entrezgene);Acc:837027] identity=44.8; qcov=0.856; evalue=1.96e-73; confidence=medium
Rice	`Os05g0499500` - identity=39.6; qcov=0.874; evalue=2.37e-66; confidence=medium
GO	-
KEGG	-
Pfam	PF01963 (TraB_PrgY_gumN)
InterPro	-
eggNOG	-
NR	GeneID:131017311

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057802005.1`
2	Mitochondrion membrane	线粒体膜	1.00000	`XP_057802005.1`
3	Nucleus	细胞核	0.00000	`XP_057802005.1`
4	Chromosome	染色体	0.00000	`XP_057802005.1`
5	Centromere	着丝粒	0.00000	`XP_057802005.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:7635346`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B2
`Chr3:7635398`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A22,B115,B2,B99,C37
`Chr3:7635637`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B125,C73
`Chr3:7636075`	`G`	`A`	EMS_canonical_SNV	stop_gained	13	A1,A4,B115,B129,B19,B2,B35,B59,B94,C12,C14,C37,C50
`Chr3:7636117`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B69
`Chr3:7636633`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A2,B52,B72,B73,D4
`Chr3:7636824`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C14
`Chr3:7637044`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr3:7637131`	`AAC`	`A`	2bp_deletion	frameshift_variant	40	A20,A21,A9,B100,B111,B118,B119,B120,B124,B128,B129,B13,B131,B136,B138,B36,B44,B5,B57,B66,B69,B79,B83,B85,B9,C17,C25,C26,C30,C35,C44,C5,C59,C7,C70,C71,C72,C75,D3,D9
`Chr3:7637136`	`GAA`	`G`	2bp_deletion	frameshift_variant	40	A20,A21,A9,B100,B111,B118,B119,B120,B124,B128,B129,B13,B131,B136,B138,B36,B44,B5,B57,B66,B69,B79,B83,B85,B9,C17,C25,C26,C30,C35,C44,C5,C59,C7,C70,C71,C72,C75,D3,D9
`Chr3:7651847`	`TGG`	`T`	2bp_deletion	frameshift_variant	1	C27
`Chr3:7651847`	`TGG`	`T`	2bp_deletion	CDS_variant	1	C27

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802005.1

327 aa

164

327

TraB_PrgY_gumN

PF01963 TraB_PrgY_gumN 216-285 aa

XP_057802006.1

326 aa

163

326

TraB_PrgY_gumN

PF01963 TraB_PrgY_gumN 216-285 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802005.1`	Pfam	`PF01963`	TraB_PrgY_gumN	Family	216	285	8.1e-14	52.8	TraB/PrgY/gumN family
`XP_057802006.1`	Pfam	`PF01963`	TraB_PrgY_gumN	Family	216	285	8e-14	52.8	TraB/PrgY/gumN family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057946022.1
TCTCGTTCTAAAATATCGCCAACGTCTCAGACCAAAATTTCGCCCAAAATCGGAAGTAGCCAAAAGATGTACATATTAAACCGTCTCAATTCGGCCAATCACCTCGCCGCCGCCGCCGCCGTGCTCAGAACGAATATCAGTCACTTCTCTCCCGCAGCGACAGCCGGAATCAGTGATACCCGCAATTCTTATGCGAGGAATAGGGGAAAAAAGCTGACGGAGCTCTCGAGGAGTGTGGTGATGCTGACTTGCGACTCATC...

XM_057946023.1
AATATCGCCAACGTCTCAGACCAAAATTTCGCCCAAAATCGGAAGTAGCCAAAAGATGTACATATTAAACCGTCTCAATTCGGCCAATCACCTCGCCGCCGCCGCCGCCGTGCTCAGAACGAATATCAGTCACTTCTCTCCCGCAGCGACAGCCGGAATCAGTGATACCCGCAATTCTTATGCGAGGAATAGGGGAAAAAAGCTGACGGAGCTCTCGAGGAGTGTGGTGATGCTGACTTGCGACTCATCTGCAGACGGCG...

CDS

2 records

下载 CDS FASTA

LOC131017311
ATGTACATATTAAACCGTCTCAATTCGGCCAATCACCTCGCCGCCGCCGCCGCCGTGCTCAGAACGAATATCAGTCACTTCTCTCCCGCAGCGACAGCCGGAATCAGTGATACCCGCAATTCTTATGCGAGGAATAGGGGAAAAAAGCTGACGGAGCTCTCGAGGAGTGTGGTGATGCTGACTTGCGACTCATCTGCAGACGGCGGCATCTGCAATGTTTACTTGATCGGATCCAATCACGCTTGTCCGAAATCCTGGGA...

Protein

2 records

下载 Protein FASTA

XP_057802005.1
MYILNRLNSANHLAAAAAVLRTNISHFSPAATAGISDTRNSYARNRGKKLTELSRSVVMLTCDSSADGGICNVYLIGSNHACPKSWEEIRAAVRFLKPEVVFLELCSSRDYLLGREEIKVPTMREMVEKWKKNQKLSWILFDWYTTKRWSRLEVEDDGDFQAANDEAKKYGAKVILGDRPIDITNQRYIAKTSICQFVTFGIEGIPVNLPNEIWEKLINGKYDAHAVQRYNQEKAKIDPAWAEIYVHERDLYMSAKILDV...

XP_057802006.1
MYILNRLNSANHLAAAAAVLRTNISHFSPAATAGISDTRNSYARNRGKKLTELSRSVVMLTCDSSADGGICNVYLIGSNHACPKSWEEIRAAVRFLKPEVVFLELCSSRDYLLGREEIKVPTMREMVEKWKKNQKLSWILFDWYTTKRWSRLEVEDDGDFQAANDEAKKYGAKVILGDRPIDITNQRYIAKTSICQFVTFGIEGIPVNLPNEIWEKLINGKYDAHAVQRYNQEKAKIDPAWAEIYVHERDLYMSAKILDV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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