Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001347`

染色体: Chr01 坐标: 26733442-26736983 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001347`
名称	SmilChr01G001347
描述	UBP1-associated protein 2A-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	26733442 - 26736983 / `-`

ID 对照

NCBI Gene ID	`LOC131017354`
GeneID	`131017354`
locus_tag	`-`
NCBI Name	`LOC131017354`
原始查询	`LOC131017354`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	UBP1-associated protein 2A-like
产物	UBP1-associated protein 2A-like
Arabidopsis	`AT3G56860` (UBA2A) UBP1-associated protein 2A [Source:NCBI gene (formerly Entrezgene);Acc:824853] identity=53.1; qcov=0.836; evalue=1.8e-122; confidence=high
Rice	`Os01g0265800` (RBP-P) - identity=49.3; qcov=0.717; evalue=2.59e-107; confidence=high
GO	GO:0003723 (RNA binding)
KEGG	smil03040 (Spliceosome - Salvia miltiorrhiza (redroot sage))
Pfam	PF00076 (RRM_1)
InterPro	-
eggNOG	-
NR	GeneID:131017354

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057802069.1`
2	Nucleoplasm	核质	1.00000	`XP_057802069.1`
3	Nuclear speckle	核斑点	0.20000	`XP_057802069.1`
4	Chromosome	染色体	0.00000	`XP_057802069.1`
5	Centromere	着丝粒	0.00000	`XP_057802069.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:26735301`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C39
`Chr1:26735303`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B19
`Chr1:26735303`	`TG`	`T`	1bp_deletion	CDS_variant	1	B19
`Chr1:26735485`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:26735540`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A4
`Chr1:26735546`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B17
`Chr1:26735689`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A3,B60
`Chr1:26735896`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	D10,D11
`Chr1:26735926`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	D10,D11
`Chr1:26735977`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A21,C82,D5
`Chr1:26736088`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A3,B60
`Chr1:26736103`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B48,C53,C78,C86,D2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802069.1

523 aa

262

523

RRM_1

PF00076 RRM_1 178-241 aa PF00076 RRM_1 280-345 aa

XP_057802075.1

523 aa

262

523

RRM_1

PF00076 RRM_1 178-241 aa PF00076 RRM_1 280-345 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802069.1`	Pfam	`PF00076`	RRM_1	Domain	178	241	4.3e-28	97.7	RNA recognition motif
`XP_057802069.1`	Pfam	`PF00076`	RRM_1	Domain	280	345	4.3e-28	97.7	RNA recognition motif
`XP_057802075.1`	Pfam	`PF00076`	RRM_1	Domain	178	241	4.3e-28	97.7	RNA recognition motif
`XP_057802075.1`	Pfam	`PF00076`	RRM_1	Domain	280	345	4.3e-28	97.7	RNA recognition motif

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057946092.1
GGAATATTCGAAAAAGGCGCAAGCAGTCTGTAGCGACTTCGTCAATCTGACATCAATCAACCTATAAAATACCTCTTTTTCTTATAGCGCAGACTCTCTTTTTCCCCCAAAATATCATTTCATAATCCATTTCCCATTTTGCTGAAACCCTAGCCACCCCCAAACAAAACCCTAACCCCATGGCCCGAAAACGGAAAACCCGCGCTGCTGAACTCCCTCAGGAGCCCGAAATTGTGCAGCCGGCGGAACCCGATCCCGAG...

XM_057946086.1
GGAATATTCGAAAAAGGCGCAAGCAGTCTGTAGCGACTTCGTCAATCTGACATCAATCAACCTATAAAATACCTCTTTTTCTTATAGCGCAGACTCTCTTTTTCCCCCAAAATATCATTTCATAATCCATTTCCCATTTTGCTGAAACCCTAGCCACCCCCAAACAAAACCCTAACCCCATGGCCCGAAAACGGAAAACCCGCGCTGCTGAACTCCCTCAGGAGCCCGAAATTGTGCAGCCGGCGGAACCCGATCCCGAG...

CDS

2 records

下载 CDS FASTA

LOC131017354
ATGGCCCGAAAACGGAAAACCCGCGCTGCTGAACTCCCTCAGGAGCCCGAAATTGTGCAGCCGGCGGAACCCGATCCCGAGCCGGAGCCCGAACCCGAGCCCGAGCCTGAGGTCAAGGCCGAGGTTGAGGTTGAGGTTGAGTCCGAGCAGACAGTAGGAGAAGGAGAAGGCGAAGGAGAAGAAGAAGAAGTGGTCGAAGAGGAAGAGGAGGAAGAAGAGCCGCCTGAGGACCACATGGAGGAGCAGAAGGATGAGGATAT...

Protein

2 records

下载 Protein FASTA

XP_057802069.1
MARKRKTRAAELPQEPEIVQPAEPDPEPEPEPEPEPEVKAEVEVEVESEQTVGEGEGEGEEEEVVEEEEEEEEPPEDHMEEQKDEDIPETNQSGGEIKEEIKEEPSENTISENGSGGGAEGEDDQGEEEFEEEPLEKLLEPFSKDQLTLLIKEALGKHPDLAEIVHRMADSDPAHCKIFVHGLGWDANAETITSVFGKYGEIEDCKVVRDKNSGKSKGYGFILFKNRDGARRALKEPQKLIEGRMTSCQLASAGPVQTPT...

XP_057802075.1
MARKRKTRAAELPQEPEIVQPAEPDPEPEPEPEPEPEVKAEVEVEVESEQTVGEGEGEGEEEEVVEEEEEEEEPPEDHMEEQKDEDIPETNQSGGEIKEEIKEEPSENTISENGSGGGAEGEDDQGEEEFEEEPLEKLLEPFSKDQLTLLIKEALGKHPDLAEIVHRMADSDPAHCKIFVHGLGWDANAETITSVFGKYGEIEDCKVVRDKNSGKSKGYGFILFKNRDGARRALKEPQKLIEGRMTSCQLASAGPVQTPT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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