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Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G000733

染色体: Chr03 坐标: 8264709-8286379 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G000733
名称SmilChr03G000733
描述aspartate--tRNA ligase 1, cytoplasmic-like
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向8264709 - 8286379 / -

ID 对照

NCBI Gene IDLOC131017356
GeneID131017356
locus_tag-
NCBI NameLOC131017356
原始查询LOC131017356

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述aspartate--tRNA ligase 1, cytoplasmic-like
产物aspartate--tRNA ligase 1%2C cytoplasmic-like
ArabidopsisAT4G31180 (AT4G31180)
Class II aminoacyl-tRNA and biotin synthetases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829246]
identity=61.5; qcov=0.627; evalue=0; confidence=high
RiceOs02g0686400
-
identity=64.8; qcov=0.592; evalue=0; confidence=medium
GOGO:0003723 (RNA binding); GO:0004815 (aspartate-tRNA ligase activity); GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0005829 (cytosol); GO:0006422 (aspartyl-tRNA aminoacylation); GO:0017101 (aminoacyl-tRNA synthetase multienzyme complex)
KEGGsmil00970 (Aminoacyl-tRNA biosynthesis - Salvia miltiorrhiza (redroot sage))
PfamPF00152 (tRNA-synt_2); PF01336 (tRNA_anti-codon)
InterPro-
eggNOG-
NRGeneID:131017356

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytosol 细胞质基质 1.00000 XP_057802067.1
2 Cytoplasm 细胞质 0.80000 XP_057802067.1
3 Nucleus 细胞核 0.00000 XP_057802067.1
4 Chromosome 染色体 0.00000 XP_057802067.1
5 Centromere 着丝粒 0.00000 XP_057802067.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:8274474 C T EMS_canonical_SNV CDS_variant 3 B71,C5,D10
Chr3:8274509 C T EMS_canonical_SNV CDS_variant 2 C5,D10
Chr3:8274524 C T EMS_canonical_SNV CDS_variant 3 A7,C5,D10
Chr3:8274528 C T EMS_canonical_SNV CDS_variant 3 A7,C5,D10
Chr3:8274530 C T EMS_canonical_SNV CDS_variant 1 B26
Chr3:8274557 G A EMS_canonical_SNV CDS_variant 3 A7,C5,D10
Chr3:8274709 G A EMS_canonical_SNV CDS_variant 1 B41
Chr3:8274741 G A EMS_canonical_SNV CDS_variant 1 A9
Chr3:8274786 C T EMS_canonical_SNV CDS_variant 1 B26
Chr3:8275269 C T EMS_canonical_SNV CDS_variant 1 B26
Chr3:8275519 C T EMS_canonical_SNV CDS_variant 1 B10
Chr3:8275646 G A EMS_canonical_SNV CDS_variant 1 B109

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802067.1
892 aa
N
1
446
892
tRNA_anti-codon
tRNA-synt_2
tRNA-synt_2
C
PF01336 tRNA_anti-codon 93-177 aa PF00152 tRNA-synt_2 215-534 aa PF00152 tRNA-synt_2 571-886 aa
XP_057802068.1
892 aa
N
1
446
892
tRNA_anti-codon
tRNA-synt_2
tRNA-synt_2
C
PF01336 tRNA_anti-codon 93-177 aa PF00152 tRNA-synt_2 215-534 aa PF00152 tRNA-synt_2 571-886 aa
XP_057802070.1
892 aa
N
1
446
892
tRNA_anti-codon
tRNA-synt_2
tRNA-synt_2
C
PF01336 tRNA_anti-codon 93-177 aa PF00152 tRNA-synt_2 215-534 aa PF00152 tRNA-synt_2 571-886 aa
XP_057802071.1
892 aa
N
1
446
892
tRNA_anti-codon
tRNA-synt_2
tRNA-synt_2
C
PF01336 tRNA_anti-codon 93-177 aa PF00152 tRNA-synt_2 215-534 aa PF00152 tRNA-synt_2 571-886 aa
XP_057802072.1
892 aa
N
1
446
892
tRNA_anti-codon
tRNA-synt_2
tRNA-synt_2
C
PF01336 tRNA_anti-codon 93-177 aa PF00152 tRNA-synt_2 215-534 aa PF00152 tRNA-synt_2 571-886 aa
XP_057802073.1
892 aa
N
1
446
892
tRNA_anti-codon
tRNA-synt_2
tRNA-synt_2
C
PF01336 tRNA_anti-codon 93-177 aa PF00152 tRNA-synt_2 215-534 aa PF00152 tRNA-synt_2 571-886 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057802067.1 Pfam PF01336 tRNA_anti-codon Domain 93 177 5.2e-07 30.2 OB-fold nucleic acid binding domain
XP_057802067.1 Pfam PF00152 tRNA-synt_2 Domain 215 534 8.1e-138 459.4 tRNA synthetases class II (D, K and N)
XP_057802067.1 Pfam PF00152 tRNA-synt_2 Domain 571 886 8.1e-138 459.4 tRNA synthetases class II (D, K and N)
XP_057802068.1 Pfam PF01336 tRNA_anti-codon Domain 93 177 5.2e-07 30.2 OB-fold nucleic acid binding domain
XP_057802068.1 Pfam PF00152 tRNA-synt_2 Domain 215 534 8.1e-138 459.4 tRNA synthetases class II (D, K and N)
XP_057802068.1 Pfam PF00152 tRNA-synt_2 Domain 571 886 8.1e-138 459.4 tRNA synthetases class II (D, K and N)
XP_057802070.1 Pfam PF01336 tRNA_anti-codon Domain 93 177 5.2e-07 30.2 OB-fold nucleic acid binding domain
XP_057802070.1 Pfam PF00152 tRNA-synt_2 Domain 215 534 8.1e-138 459.4 tRNA synthetases class II (D, K and N)
XP_057802070.1 Pfam PF00152 tRNA-synt_2 Domain 571 886 8.1e-138 459.4 tRNA synthetases class II (D, K and N)
XP_057802071.1 Pfam PF01336 tRNA_anti-codon Domain 93 177 5.2e-07 30.2 OB-fold nucleic acid binding domain
XP_057802071.1 Pfam PF00152 tRNA-synt_2 Domain 215 534 8.1e-138 459.4 tRNA synthetases class II (D, K and N)
XP_057802071.1 Pfam PF00152 tRNA-synt_2 Domain 571 886 8.1e-138 459.4 tRNA synthetases class II (D, K and N)
XP_057802072.1 Pfam PF01336 tRNA_anti-codon Domain 93 177 5.2e-07 30.2 OB-fold nucleic acid binding domain
XP_057802072.1 Pfam PF00152 tRNA-synt_2 Domain 215 534 8.1e-138 459.4 tRNA synthetases class II (D, K and N)
XP_057802072.1 Pfam PF00152 tRNA-synt_2 Domain 571 886 8.1e-138 459.4 tRNA synthetases class II (D, K and N)
XP_057802073.1 Pfam PF01336 tRNA_anti-codon Domain 93 177 5.2e-07 30.2 OB-fold nucleic acid binding domain
XP_057802073.1 Pfam PF00152 tRNA-synt_2 Domain 215 534 8.1e-138 459.4 tRNA synthetases class II (D, K and N)
XP_057802073.1 Pfam PF00152 tRNA-synt_2 Domain 571 886 8.1e-138 459.4 tRNA synthetases class II (D, K and N)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA
XM_057946088.1
CGACAAACATTTTTGTGTCGCTTTCACCATCTGTCTCCTGTTGCGCTCTCGTTTGTAGCCTCATTCTCTGTTTCCCGTCGGTCGAAGTTGCTCGTCTCCTCCGGTTGTCGGCGGCCTTCTCGTTTCACCTCGGAAATCTCCGCAGCAGCAGCCTGCATCCCACCCCGACTTAGTGCACTGCTGCACGGCCCATCATTTCCTGTACCTCTTTCGGACTCGGCTTTTCCTTCCGATGATTCTATAGCAGCTGTTGAGCCTCT...
XM_057946085.1
GCACAACATTCACCCTCTAAATCCCACCGGCCGACGCCGATCGCCTCCTCCGGTTGTCGTCGCCAGCCTCACTTCACCTTGAAATCTCTGCACCAGCACCCAGCATTCCGCTTCGCCTCAGTGTGCCAGTGCACAACCCATCAATTTTCGTCGTCCTGCTTCCTCCGGCCTCCGCCCATTCGTCCGGCGACTATGTGGCTGCTATCTGCCGACATCTTCCCAGCCCAACGGCTAATAGCAGGTAAATTGACTGCAAATCT...

CDS

6 records

下载 CDS FASTA
LOC131017356
ATGTCGTCTGAACCCTCCCACAACCCCGCCGCCGCCGAAGAGTTGGGCGAGAAGAAGCTCTCCAAGAAAGAGCTTGCCAAGCTGGAGCGCCTGCGCAAGCGCCAAGAAGCAGCCGCCGCCGCTGCCACATCTGTCGCAGCCCTCACCCTCGAAGATGAGGACCGACTGGCGGTCAATTACGGCGAAATTCCGGCCAACGACTTACAGTCGAAGGCAGTAATTGGGAGAAAATTGATGGAGGTCAAATATTTGACCAAAGA...
LOC131017356
ATGTCGTCTGAACCCTCCCACAACCCCGCCGCCGCCGAAGAGTTGGGCGAGAAGAAGCTCTCCAAGAAAGAGCTTGCCAAGCTGGAGCGCCTGCGCAAGCGCCAAGAAGCAGCCGCCGCCGCTGCCACATCTGTCGCAGCCCTCACCCTCGAAGATGAGGACCGACTGGCGGTCAATTACGGCGAAATTCCGGCCAACGACTTACAGTCGAAGGCAGTAATTGGGAGAAAATTGATGGAGGTCAAATATTTGACCAAAGA...

Protein

6 records

下载 Protein FASTA
XP_057802067.1
MSSEPSHNPAAAEELGEKKLSKKELAKLERLRKRQEAAAAAATSVAALTLEDEDRLAVNYGEIPANDLQSKAVIGRKLMEVKYLTKELKDKAVQVQGYAQAIRAVGKKMAFLVVREESFTVQCVLTVAQDLVSPQMVKFANSLSRESIVDIEGIVSVPSQPITGASQQVEIQVRKLYCVSKAVPILPFNIEDAARSEAEIEKALQAGEPLVRVNPDTRLNNRFFDLRTPANQGIFGVESEVENIFRQFMLSEGFCKIHTP...
XP_057802068.1
MSSEPSHNPAAAEELGEKKLSKKELAKLERLRKRQEAAAAAATSVAALTLEDEDRLAVNYGEIPANDLQSKAVIGRKLMEVKYLTKELKDKAVQVQGYAQAIRAVGKKMAFLVVREESFTVQCVLTVAQDLVSPQMVKFANSLSRESIVDIEGIVSVPSQPITGASQQVEIQVRKLYCVSKAVPILPFNIEDAARSEAEIEKALQAGEPLVRVNPDTRLNNRFFDLRTPANQGIFGVESEVENIFRQFMLSEGFCKIHTP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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