Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000737`

染色体: Chr03 坐标: 8350153-8351648 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000737`
名称	SmilChr03G000737
描述	F-box/kelch-repeat protein At3g06240-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	8350153 - 8351648 / `+`

ID 对照

NCBI Gene ID	`LOC131017358`
GeneID	`131017358`
locus_tag	`-`
NCBI Name	`LOC131017358`
原始查询	`LOC131017358`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box/kelch-repeat protein At3g06240-like
产物	F-box/kelch-repeat protein At3g06240-like
Arabidopsis	`AT3G06240` (AT3G06240) F-box family protein [Source:NCBI gene (formerly Entrezgene);Acc:819798] identity=27.3; qcov=1.09; evalue=2.77e-31; confidence=low
Rice	`Os09g0479100` (OsFbox492) - identity=25.8; qcov=0.672; evalue=4.3e-15; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF07734 (FBA_1); PF08268 (FBA_3); PF12937 (F-box-like)
InterPro	-
eggNOG	-
NR	GeneID:131017358

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057802074.1`
2	Cytoplasm	细胞质	1.00000	`XP_057802074.1`
3	Cytosol	细胞质基质	0.20000	`XP_057802074.1`
4	Chromosome	染色体	0.00000	`XP_057802074.1`
5	Centromere	着丝粒	0.00000	`XP_057802074.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:8350370`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	C24,C71,C78,D7
`Chr3:8350392`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr3:8350397`	`A`	`AAG`	2bp_insertion	frameshift_variant	1	B139
`Chr3:8350397`	`A`	`AAG`	2bp_insertion	CDS_variant	1	B139
`Chr3:8350404`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B16,B41,B49,C10,C74
`Chr3:8350563`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B67,C3
`Chr3:8350578`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C3
`Chr3:8350699`	`T`	`TTG`	2bp_insertion	frameshift_variant	1	B13
`Chr3:8350699`	`T`	`TTG`	2bp_insertion	CDS_variant	1	B13
`Chr3:8350711`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B130
`Chr3:8350823`	`T`	`TAC`	2bp_insertion	frameshift_variant	127	A1,A10,A16,A18,A2,A20,A23,A24,A3,A4,A6,A7,A8,B1,B10,B105,B111,B112,B114,B115,B117,B118,B12,B120,B123,B126,B127,B13,B131,B132,B133,B134,B136,B137,B139,B15,B18,B19,B2,B20,B23,B25,B26,B28,B3,B31,B33,B38,B39,B42,B43,B44,B45,B48,B53,B56,B58,B60,B65,B66,B68,B69,B70,B72,B73,B74,B77,B78,B84,B87,B88,B89,B91,B94,B95,B96,C10,C11,C12,C13,C16,C18,C19,C21,C22,C24,C25,C28,C3,C30,C31,C35,C37,C38,C39,C4,C40,C41,C46,C47,C48,C50,C52,C57,C6,C63,C64,C66,C68,C69,C70,C72,C74,C77,C78,C79,C8,C80,C81,C86,D1,D10,D11,D2,D3,D5,D6
`Chr3:8350825`	`TTG`	`T`	2bp_deletion	frameshift_variant	127	A1,A10,A16,A18,A2,A20,A23,A24,A3,A4,A6,A7,A8,B1,B10,B105,B111,B112,B114,B115,B117,B118,B12,B120,B123,B126,B127,B13,B131,B132,B133,B134,B136,B137,B139,B15,B18,B19,B2,B20,B23,B25,B26,B28,B3,B31,B33,B38,B39,B42,B43,B44,B45,B48,B53,B56,B58,B60,B65,B66,B68,B69,B70,B72,B73,B74,B77,B78,B84,B87,B88,B89,B91,B94,B95,B96,C10,C11,C12,C13,C16,C18,C19,C21,C22,C24,C25,C28,C3,C30,C31,C35,C37,C38,C39,C4,C40,C41,C46,C47,C48,C50,C52,C57,C6,C63,C64,C66,C68,C69,C70,C72,C74,C77,C78,C79,C8,C80,C81,C86,D1,D10,D11,D2,D3,D5,D6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802074.1

381 aa

190

381

F-box

F-box-like

FBA_3

FBA_1

PF00646 F-box 11-51 aa PF12937 F-box-like 12-50 aa PF08268 FBA_3 122-302 aa PF07734 FBA_1 125-377 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802074.1`	Pfam	`PF00646`	F-box	Domain	11	51	1.1e-10	41.7	F-box domain
`XP_057802074.1`	Pfam	`PF12937`	F-box-like	Domain	12	50	2.4e-07	31.1	F-box-like
`XP_057802074.1`	Pfam	`PF08268`	FBA_3	Repeat	122	302	4.4e-12	46.4	F-box associated beta propeller domain
`XP_057802074.1`	Pfam	`PF07734`	FBA_1	Repeat	125	377	4.4e-19	69.3	F-box associated beta propeller domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057946091.1
TCTCTCATCTCCTCTTTCCTTTTTTCCTATTTATTCTCATTTTCATAACTACTTTTATTGCTCTTCTTTTCTCTTTCCGCTCTAATATTAGTAATTGGTAGAATGCCACAAAAAGATGCTACACATCTTGACCCTTTCCTATTTTTTTCTTCTTAGCCCTCAGAAACATATTGGGTATGGAGATCGAAAGCAATAGTCAGCAATCTCTCCATCTTCCGGAAGAAATCATTGGAGAAATACTGCCAAGACTGCCGGTGAAA...

CDS

1 records

下载 CDS FASTA

LOC131017358
ATGGAGATCGAAAGCAATAGTCAGCAATCTCTCCATCTTCCGGAAGAAATCATTGGAGAAATACTGCCAAGACTGCCGGTGAAATCACTGTTGAGATTCAGGTGCGTTTCCAAATCATGGGGCTCTTTAATTGGCAGCGAAAGATTCATAAAAAAACACCACCAAAATTCGATGAAAAACCCCTCTTTCACCCAACAAAGGTTCAATGTAGAGGCGAATTTGTTTGAATGGCCTGAGCAATGTTCTCTGCTGTCGGTTTT...

Protein

1 records

下载 Protein FASTA

XP_057802074.1
MEIESNSQQSLHLPEEIIGEILPRLPVKSLLRFRCVSKSWGSLIGSERFIKKHHQNSMKNPSFTQQRFNVEANLFEWPEQCSLLSVLSGPINTIPFSPLAYPTNTTLWPRLVYPRITLSMGYDIVGSCNGLLCIVSIDNVFHLWNPSTRISKKLPEISIVYYLDDFDNFGFGWVESSDEYKVFVNVVEYNSSVGEIYSTRTKSWKTIELCPYFLPFSKGGLFGGGKLYWMYEDDQVIIFLDLKSEVFGRIEIPFDQEMYG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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