Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G000743

染色体: Chr03 坐标: 8471601-8514592 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G000743
名称SmilChr03G000743
描述AP2-like ethylene-responsive transcription factor AIL5
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向8471601 - 8514592 / -

ID 对照

NCBI Gene IDLOC131017364
GeneID131017364
locus_tag-
NCBI NameLOC131017364
原始查询LOC131017364

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述AP2-like ethylene-responsive transcription factor AIL5
产物AP2-like ethylene-responsive transcription factor AIL5
ArabidopsisAT5G57390 (AIL5)
AINTEGUMENTA-like 5 [Source:NCBI gene (formerly Entrezgene);Acc:835845]
identity=91.2; qcov=0.895; evalue=5.48e-40; confidence=medium
RiceOs03g0176300 (OsPLT10)
-
identity=86.8; qcov=0.895; evalue=7.62e-40; confidence=medium
GOGO:0003677 (DNA binding); GO:0003700 (DNA-binding transcription factor activity); GO:0006355 (regulation of DNA-templated transcription)
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131017364

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057802078.1
2 Cytoplasm 细胞质 0.20000 XP_057802079.1
3 Chromosome 染色体 0.00000 XP_057802078.1
4 Centromere 着丝粒 0.00000 XP_057802078.1
5 Chromatin 染色质 0.00000 XP_057802078.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:8471692 ATG A 2bp_deletion frameshift_variant 91 A1,A10,A11,A13,A14,A15,A19,A23,A5,A6,A7,A8,B10,B101,B102,B106,B109,B11,B112,B113,B114,B120,B123,B127,B13,B130,B132,B133,B137,B15,B18,B19,B26,B28,B31,B37,B39,B42,B43,B47,B48,B53,B57,B61,B62,B64,B66,B67,B70,B71,B72,B73,B74,B80,B82,B84,B88,B89,B90,B91,B92,B99,C13,C15,C18,C19,C22,C28,C3,C31,C33,C36,C39,C40,C42,C45,C51,C54,C56,C57,C63,C65,C71,C74,C81,C85,D1,D11,D2,D3,D6
Chr3:8471704 G GA 1bp_insertion frameshift_variant 150 A1,A15,A19,A20,A22,A24,A25,A3,A4,A7,A9,B10,B100,B104,B107,B108,B110,B112,B114,B117,B118,B12,B122,B125,B127,B128,B129,B13,B130,B131,B133,B134,B137,B139,B14,B140,B20,B21,B22,B23,B24,B25,B27,B3,B33,B34,B35,B36,B37,B40,B41,B43,B44,B45,B47,B49,B50,B51,B54,B56,B57,B59,B60,B63,B65,B7,B71,B73,B76,B77,B79,B8,B80,B81,B83,B84,B85,B86,B9,B90,B92,B93,B94,B96,B97,B98,C1,C10,C11,C12,C14,C16,C17,C19,C20,C21,C22,C23,C24,C25,C26,C27,C29,C3,C30,C32,C34,C38,C39,C4,C40,C41,C42,C43,C46,C48,C5,C50,C55,C59,C6,C61,C62,C63,C64,C66,C68,C69,C71,C72,C73,C74,C75,C76,C77,C78,C79,C8,C80,C82,C84,C85,C87,C9,D10,D11,D2,D3,D5,D8
Chr3:8471709 A AT 1bp_insertion frameshift_variant 9 A18,B3,B44,B5,B78,C47,C56,C86,D9
Chr3:8471710 C CTA 2bp_insertion frameshift_variant 26 A1,B115,B127,B132,B15,B33,B37,B47,B57,B62,B64,B67,B71,B82,B88,B89,B90,B91,B92,C40,C42,C54,C6,C63,C85,D2
Chr3:8471751 G A EMS_canonical_SNV CDS_variant 1 A24
Chr3:8471761 C T EMS_canonical_SNV CDS_variant 1 A24
Chr3:8471773 GC G 1bp_deletion frameshift_variant 26 A2,A23,A9,B113,B120,B138,B20,B21,B26,B32,B34,B41,B42,B43,B5,B6,B64,B69,B79,B98,C13,C2,C24,C49,C59,D7
Chr3:8471791 G A EMS_canonical_SNV CDS_variant 4 A21,A24,B115,B70
Chr3:8471967 G A EMS_canonical_SNV CDS_variant 5 B10,B113,B117,B87,D1
Chr3:8472085 C T EMS_canonical_SNV CDS_variant 2 A3,C79
Chr3:8472088 C T EMS_canonical_SNV CDS_variant 5 A3,B135,B36,B74,C22
Chr3:8472109 C T EMS_canonical_SNV CDS_variant 1 B91

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA
XR_009099566.1
ATAAGGTTTTCTTGAATTTAATTAACTCTTTGTTTCTTTCCTTGTCTTCTCTTATTTGGGTTTGAATTACTTTGAAATGCTACTGCAGTTTACTTGGGTAAGTCTTTGCCTTTTGTACTAATTCTCTAATAATTTTGCAGTAAAAAGGAAAAGATATAGATATATTGATTCATGTTATTTTAATTATTGCAGGGGTTATGATAAGGAAGATAACGGCTGCTCGAGCTTATGATTTAGCAGCAATGAAGTATTGGGGGAAC...
XR_009099565.1
TATTATGATAAGGTTTTCTTGAATTTAATTAACTCTTTGTTTCTTTCCTTGTCTTCTCTTATTTGGGTTTGAATTACTTTGAAATGCTACTGCAGTTTACTTGGGGGTTATGATAAGGAAGATAACGGCTGCTCGAGCTTATGATTTAGCAGCAATGAAGTATTGGGGGAACTACCACAACAACAAATTTTCCGATGAGTAACTATGAGAAAGAGATTGAGGAAATGAAGCATATGACAAGGCAGGAATATGTAGCATCT...

CDS

2 records

下载 CDS FASTA
LOC131017364
ATGAGTAACTATGAGAAAGAGATAGAGGAAATGAAGCATATGACAAGGCAGGAATATGTAGTATCATTGAGAAGAAAAAGCAGTGGATTCTCTAGAGGAGCATCCATGTATACAGGAGTTACAAGGCACCACCAACATGGGAGATGGCAAGCAAGAATTGGAAGAGTTGCAGGAAACAAAGACCTCTACTTAGGAACTTTCAGTAAGATAGTTAATCCAATTTCTACATAA
LOC131017364
ATGGCTTCCATGAACAACTGGCTAGGCTTCTCTCTCTCTCCTCAAGATCATCAACACCCACAAATAGGCAACTTCACCTCTGATGAAATCTCAACCGCACAAATCTCTGGGGAATCTTGCTTCCATCTCCCCTCAGATTCTCCCATCCCCTCTCTGAATCTCCCTGCCCCACCTTTTGGCATCATGGAAGCTTTCAACAGAAATAACAATCACTCTCAAGGGGTTATGATAAGGAAGATAACGGCTGCTCGAGCTTATGA...

Protein

2 records

下载 Protein FASTA
XP_057802078.1
MASMNNWLGFSLSPQDHQHPQIGNFTSDEISTAQISGESCFHLPSDSPIPSLNLPAPPFGIMEAFNRNNNHSQGVMIRKITAARAYDLAAMKYWGNYHNNKFSDE
XP_057802079.1
MSNYEKEIEEMKHMTRQEYVVSLRRKSSGFSRGASMYTGVTRHHQHGRWQARIGRVAGNKDLYLGTFSKIVNPIST

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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