当前解析结果
SmilChr03G000743| 统一新 Gene ID | SmilChr03G000743 |
|---|---|
| 名称 | SmilChr03G000743 |
| 描述 | AP2-like ethylene-responsive transcription factor AIL5 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 8471601 - 8514592 / - |
| NCBI Gene ID | LOC131017364 |
|---|---|
| GeneID | 131017364 |
| locus_tag | - |
| NCBI Name | LOC131017364 |
| 原始查询 | LOC131017364 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | AP2-like ethylene-responsive transcription factor AIL5 |
| 产物 | AP2-like ethylene-responsive transcription factor AIL5 |
| Arabidopsis | AT5G57390 (AIL5)AINTEGUMENTA-like 5 [Source:NCBI gene (formerly Entrezgene);Acc:835845] identity=91.2; qcov=0.895; evalue=5.48e-40; confidence=medium |
| Rice | Os03g0176300 (OsPLT10)- identity=86.8; qcov=0.895; evalue=7.62e-40; confidence=medium |
| GO | GO:0003677 (DNA binding); GO:0003700 (DNA-binding transcription factor activity); GO:0006355 (regulation of DNA-templated transcription) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017364 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057802078.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057802079.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057802078.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057802078.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057802078.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:8471692 |
ATG |
A |
2bp_deletion | frameshift_variant | 91 | A1,A10,A11,A13,A14,A15,A19,A23,A5,A6,A7,A8,B10,B101,B102,B106,B109,B11,B112,B113,B114,B120,B123,B127,B13,B130,B132,B133,B137,B15,B18,B19,B26,B28,B31,B37,B39,B42,B43,B47,B48,B53,B57,B61,B62,B64,B66,B67,B70,B71,B72,B73,B74,B80,B82,B84,B88,B89,B90,B91,B92,B99,C13,C15,C18,C19,C22,C28,C3,C31,C33,C36,C39,C40,C42,C45,C51,C54,C56,C57,C63,C65,C71,C74,C81,C85,D1,D11,D2,D3,D6 |
Chr3:8471704 |
G |
GA |
1bp_insertion | frameshift_variant | 150 | A1,A15,A19,A20,A22,A24,A25,A3,A4,A7,A9,B10,B100,B104,B107,B108,B110,B112,B114,B117,B118,B12,B122,B125,B127,B128,B129,B13,B130,B131,B133,B134,B137,B139,B14,B140,B20,B21,B22,B23,B24,B25,B27,B3,B33,B34,B35,B36,B37,B40,B41,B43,B44,B45,B47,B49,B50,B51,B54,B56,B57,B59,B60,B63,B65,B7,B71,B73,B76,B77,B79,B8,B80,B81,B83,B84,B85,B86,B9,B90,B92,B93,B94,B96,B97,B98,C1,C10,C11,C12,C14,C16,C17,C19,C20,C21,C22,C23,C24,C25,C26,C27,C29,C3,C30,C32,C34,C38,C39,C4,C40,C41,C42,C43,C46,C48,C5,C50,C55,C59,C6,C61,C62,C63,C64,C66,C68,C69,C71,C72,C73,C74,C75,C76,C77,C78,C79,C8,C80,C82,C84,C85,C87,C9,D10,D11,D2,D3,D5,D8 |
Chr3:8471709 |
A |
AT |
1bp_insertion | frameshift_variant | 9 | A18,B3,B44,B5,B78,C47,C56,C86,D9 |
Chr3:8471710 |
C |
CTA |
2bp_insertion | frameshift_variant | 26 | A1,B115,B127,B132,B15,B33,B37,B47,B57,B62,B64,B67,B71,B82,B88,B89,B90,B91,B92,C40,C42,C54,C6,C63,C85,D2 |
Chr3:8471751 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A24 |
Chr3:8471761 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A24 |
Chr3:8471773 |
GC |
G |
1bp_deletion | frameshift_variant | 26 | A2,A23,A9,B113,B120,B138,B20,B21,B26,B32,B34,B41,B42,B43,B5,B6,B64,B69,B79,B98,C13,C2,C24,C49,C59,D7 |
Chr3:8471791 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A21,A24,B115,B70 |
Chr3:8471967 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B10,B113,B117,B87,D1 |
Chr3:8472085 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A3,C79 |
Chr3:8472088 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A3,B135,B36,B74,C22 |
Chr3:8472109 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B91 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。