Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000753`

染色体: Chr03 坐标: 8606639-8621644 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000753`
名称	SmilChr03G000753
描述	protein CHROMATIN REMODELING 20-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	8606639 - 8621644 / `+`

ID 对照

NCBI Gene ID	`LOC131017373`
GeneID	`131017373`
locus_tag	`-`
NCBI Name	`LOC131017373`
原始查询	`LOC131017373`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein CHROMATIN REMODELING 20-like
产物	protein CHROMATIN REMODELING 20-like
Arabidopsis	`AT1G08600` (ATRX) P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837382] identity=67.1; qcov=0.653; evalue=0; confidence=high
Rice	`Os10g0457700` - identity=67.5; qcov=0.551; evalue=0; confidence=medium
GO	GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0016887 (ATP hydrolysis activity); GO:0140658 (ATP-dependent chromatin remodeler activity)
KEGG	-
Pfam	PF00176 (SNF2-rel_dom); PF00271 (Helicase_C); PF04851 (ResIII)
InterPro	-
eggNOG	-
NR	GeneID:131017373

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057802085.1`
2	Chromosome	染色体	0.00000	`XP_057802085.1`
3	Centromere	着丝粒	0.00000	`XP_057802085.1`
4	Chromatin	染色质	0.00000	`XP_057802085.1`
5	Telomere	端粒	0.00000	`XP_057802085.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:8606901`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B16,B70,C15,C79,D9
`Chr3:8606931`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B1,C85
`Chr3:8609366`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B114,B25,C41,C81,C84
`Chr3:8609943`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A5,C72
`Chr3:8609954`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B91,C6
`Chr3:8610706`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A15,A16,B104,B26,B4
`Chr3:8610743`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr3:8613567`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B114,B25,C41,C81,C84
`Chr3:8613591`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A15,A16,B26,B4
`Chr3:8613691`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A21,B104,B98
`Chr3:8613693`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C55,D8
`Chr3:8613841`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A21,B104,B98

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802085.1

1347 aa

674

1347

SNF2-rel_dom

ResIII

Helicase_C

PF00176 SNF2-rel_dom 581-901 aa PF04851 ResIII 594-765 aa PF00271 Helicase_C 975-1101 aa

XP_057802086.1

1346 aa

673

1346

SNF2-rel_dom

ResIII

Helicase_C

PF00176 SNF2-rel_dom 581-900 aa PF04851 ResIII 594-764 aa PF00271 Helicase_C 974-1100 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802085.1`	Pfam	`PF00176`	SNF2-rel_dom	Domain	581	901	2.3e-54	185.2	SNF2-related domain
`XP_057802085.1`	Pfam	`PF04851`	ResIII	Family	594	765	1.6e-06	28.9	Type III restriction enzyme, res subunit
`XP_057802085.1`	Pfam	`PF00271`	Helicase_C	Domain	975	1101	1.5e-19	71.0	Helicase conserved C-terminal domain
`XP_057802086.1`	Pfam	`PF00176`	SNF2-rel_dom	Domain	581	900	1.7e-54	185.6	SNF2-related domain
`XP_057802086.1`	Pfam	`PF04851`	ResIII	Family	594	764	5.4e-06	27.1	Type III restriction enzyme, res subunit
`XP_057802086.1`	Pfam	`PF00271`	Helicase_C	Domain	974	1100	1.5e-19	71.0	Helicase conserved C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057946102.1
GTCATGGATTCAGTTTCAATATTTCAAACAAGGCATAAATGGTAGCGCAGAGATAAAATCAAAATTAAATTAGCTGATTAGGGCATCGAAATTCCTTTTACCGCCAGTTCCTGTTTCCCCAAATAAGGGCGATACGGCGTCGTTAGGATCCAAATTTCACAGTCTCCTTTGCTAAAACCCACTGAATAAAATATAAAATAAAAAAATTGCAGCGCAAATTTTCTGCAAGACGTTAATTTTGATCCAAGCAGATACAGTGA...

XM_057946103.1
ATTAGCTGATTAGGGCATCGAAATTCCTTTTACCGCCAGTTCCTGTTTCCCCAAATAAGGGCGATACGGCGTCGTTAGGATCCAAATTTCACAGTCTCCTTTGCTAAAACCCACTGAATAAAATATAAAATAAAAAAATTGCAGCGCAAATTTTCTGCAAGACGTTAATTTTGATCCAAGCAGATACAGTGATGGTTGATGAAGGAGAGGTTGAGAAGAAGGATGAAGAAATTGTTGATGTAGAGGAAGAATTTTCTGAC...

CDS

2 records

下载 CDS FASTA

LOC131017373
ATGGTTGATGAAGGAGAGGTTGAGAAGAAGGATGAAGAAATTGTTGATGTAGAGGAAGAATTTTCTGACAATTCAGCTGAAAATAATAATGATGAAGCTGAAGAAGAACTGGAAGAAGAATCTCATTCTGAGGAACCCTTGACTGAGGAGGAGATAGAGGATCTAATTGCCGAGCTTTTAGAAGTTGAGAGTAAAGCTGCGGAAGCCCAGGAAACATTGGAAGAGGAATCCTTAATCAATGTAGAGGCTGATGTTAGGAA...

Protein

2 records

下载 Protein FASTA

XP_057802085.1
MVDEGEVEKKDEEIVDVEEEFSDNSAENNNDEAEEELEEESHSEEPLTEEEIEDLIAELLEVESKAAEAQETLEEESLINVEADVRKELAQSLSGDELDKAVSGEMAAFREQWEVELDELETESAHLLEQLDGAGIDLSSLYKWIEKQAPNGCCTVAWKNRTHWAGTHLSTDARESVTKAEEFLQVHRPVRRRHGKVLEEGASGFLGKKVEKSESSEAVNDTTTVDWDSFSKICSDKSSLEDITFGSKHWASVYLASTPQ...

XP_057802086.1
MVDEGEVEKKDEEIVDVEEEFSDNSAENNNDEAEEELEEESHSEEPLTEEEIEDLIAELLEVESKAAEAQETLEEESLINVEADVRKELAQSLSGDELDKAVSGEMAAFREQWEVELDELETESAHLLEQLDGAGIDLSSLYKWIEKQAPNGCCTVAWKNRTHWAGTHLSTDARESVTKAEEFLQVHRPVRRRHGKVLEEGASGFLGKKVEKSESSEAVNDTTTVDWDSFSKICSDKSSLEDITFGSKHWASVYLASTPQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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