Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000781`

染色体: Chr03 坐标: 8891005-8899589 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000781`
名称	SmilChr03G000781
描述	disease resistance protein RPP8-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	8891005 - 8899589 / `-`

ID 对照

NCBI Gene ID	`LOC131017398`
GeneID	`131017398`
locus_tag	`-`
NCBI Name	`LOC131017398`
原始查询	`LOC131017398`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	disease resistance protein RPP8-like
产物	disease resistance protein RPP8-like
Arabidopsis	`AT5G43470` (RPP8) Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:834367] identity=26.5; qcov=1.03; evalue=1.45e-35; confidence=low
Rice	`Os10g0136100` - identity=30.8; qcov=0.61; evalue=3e-32; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF13401 (AAA_22)
InterPro	-
eggNOG	-
NR	GeneID:131017398

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057802119.1`
2	Cytosol	细胞质基质	0.20000	`XP_057802119.1`
3	Nucleus	细胞核	0.00000	`XP_057802119.1`
4	Chromosome	染色体	0.00000	`XP_057802119.1`
5	Centromere	着丝粒	0.00000	`XP_057802119.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:8892409`	`C`	`T`	EMS_canonical_SNV	stop_gained	3	B108,C36,C45
`Chr3:8892409`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B108,C36,C45
`Chr3:8892485`	`A`	`AAG`	2bp_insertion	frameshift_variant	18	A10,B114,B129,B13,B14,B15,B23,B28,B58,B64,B84,B87,B91,B97,C35,C37,C77,C9
`Chr3:8892489`	`GA`	`G`	1bp_deletion	frameshift_variant	25	A10,A6,B112,B129,B133,B14,B15,B23,B24,B28,B52,B58,B64,B84,B91,B95,C12,C16,C37,C46,C51,C54,C71,C80,C84
`Chr3:8892493`	`GAA`	`G`	2bp_deletion	frameshift_variant	3	B13,B97,C77
`Chr3:8892493`	`GAA`	`G`	2bp_deletion	CDS_variant	3	B13,B97,C77
`Chr3:8892531`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B130
`Chr3:8892609`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B130,D10
`Chr3:8892633`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B105,B114,B50,C4,C77
`Chr3:8892693`	`G`	`GCA`	2bp_insertion	frameshift_variant	9	B137,B39,C31,C68,C72,C82,C86,C87,D5
`Chr3:8892694`	`ACT`	`A`	2bp_deletion	frameshift_variant	9	B137,B39,C31,C68,C72,C82,C86,C87,D5
`Chr3:8892772`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B118

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802119.1

528 aa

264

528

NB-ARC

AAA_22

PF00931 NB-ARC 144-300 aa PF13401 AAA_22 148-240 aa

XP_057802120.1

528 aa

264

528

NB-ARC

AAA_22

PF00931 NB-ARC 144-300 aa PF13401 AAA_22 148-240 aa

XP_057802121.1

528 aa

264

528

NB-ARC

AAA_22

PF00931 NB-ARC 144-300 aa PF13401 AAA_22 148-240 aa

XP_057802122.1

528 aa

264

528

NB-ARC

AAA_22

PF00931 NB-ARC 144-300 aa PF13401 AAA_22 148-240 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802119.1`	Pfam	`PF00931`	NB-ARC	Domain	144	300	6e-24	85.3	NB-ARC domain
`XP_057802119.1`	Pfam	`PF13401`	AAA_22	Domain	148	240	4.5e-07	31.0	AAA domain
`XP_057802120.1`	Pfam	`PF00931`	NB-ARC	Domain	144	300	6e-24	85.3	NB-ARC domain
`XP_057802120.1`	Pfam	`PF13401`	AAA_22	Domain	148	240	4.5e-07	31.0	AAA domain
`XP_057802121.1`	Pfam	`PF00931`	NB-ARC	Domain	144	300	6e-24	85.3	NB-ARC domain
`XP_057802121.1`	Pfam	`PF13401`	AAA_22	Domain	148	240	4.5e-07	31.0	AAA domain
`XP_057802122.1`	Pfam	`PF00931`	NB-ARC	Domain	144	300	6e-24	85.3	NB-ARC domain
`XP_057802122.1`	Pfam	`PF13401`	AAA_22	Domain	148	240	4.5e-07	31.0	AAA domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

12 records

下载 cDNA FASTA

XR_009099591.1
GTTGAGCTGTAACTGTGACTAATTTGTGAATTCGTAGTTTATAGCCCCTCCCAACTCTGTTTTGGCTTGTTCAAAGATATCAAATCACTCTCAGGCTCTCAGCTGGTCAGAAGAGCAAAGATAAGGAGAGAGAGAAGGAGGATTGAATCAAAAAATTAATCAAGACGAGCAAAGATAAGAAGAAACTTCGCAAAAAGTTTAATTCAAGCAGAAACATGTCGGAGGCCCTCCTCTTATCGGTGATACACAAGCTGGACATT...

XR_009099594.1
GTTGAGCTGTAACTGTGACTAATTTGTGAATTCGTAGTTTATAGCCCCTCCCAACTCTGTTTTGGCTTGTTCAAAGATATCAAATCACTCTCAGGCTCTCAGCTGGTCAGAAGAGCAAAGATAAGGAGAGAGAGAAGGAGGATTGAATCAAAAAATTAATCAAGACGAGCAAAGATAAGAAGAAACTTCGCAAAAAGGGCAGTTTAATTCAAGCAGAAACATGTCGGAGGCCCTCCTCTTATCGGTGATACACAAGCTGG...

CDS

4 records

下载 CDS FASTA

LOC131017398
ATGTCGGAGGCCCTCCTCTTATCGGTGATACACAAGCTGGACATTAAGTATGGAGAGGACACGAAAACAAAGGAGATTATAAAAGAGCAAATGGAAAGGGTTATTAAAGAGATGAGAGAGATTGTGGATATTGTGAGGGATAAGAAATTGGAAGATGGGAGAAGCCTCAATTTTTTGGTATCTGACCTTGTCGACGTGGCTGACGATGTCCTCCGCCTTTTCACAAAAAGGGAAACCTTACCTTTGTACTATGTTTCCAT...

Protein

4 records

下载 Protein FASTA

XP_057802119.1
MSEALLLSVIHKLDIKYGEDTKTKEIIKEQMERVIKEMREIVDIVRDKKLEDGRSLNFLVSDLVDVADDVLRLFTKRETLPLYYVSIHTWIGEIKKRMLRLGDDGVEMESNMRSSENVEDDDVDVVGLEQDVKILIRERIIGGIDSTVLIKGMSGIGKTTLAREIYNHPTVVEHFQHRAWVSNSVDLTIKELLIKLIQQLEDPQNPHTSSLLENMDNRSLRDMLRQHLQGTRYLIVLDDLPKQMRFMSFLGDLPQKWNGN...

XP_057802120.1
MSEALLLSVIHKLDIKYGEDTKTKEIIKEQMERVIKEMREIVDIVRDKKLEDGRSLNFLVSDLVDVADDVLRLFTKRETLPLYYVSIHTWIGEIKKRMLRLGDDGVEMESNMRSSENVEDDDVDVVGLEQDVKILIRERIIGGIDSTVLIKGMSGIGKTTLAREIYNHPTVVEHFQHRAWVSNSVDLTIKELLIKLIQQLEDPQNPHTSSLLENMDNRSLRDMLRQHLQGTRYLIVLDDLPKQMRFMSFLGDLPQKWNGN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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