Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001349`

染色体: Chr01 坐标: 26756632-26765542 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001349`
名称	SmilChr01G001349
描述	uncharacterized SmilChr01G001349
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	26756632 - 26765542 / `-`

ID 对照

NCBI Gene ID	`LOC131017399`
GeneID	`131017399`
locus_tag	`-`
NCBI Name	`LOC131017399`
原始查询	`LOC131017399`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Tryptophan/tyrosine permease [Source:NCBI gene (formerly Entrezgene);Acc:832070]; symbol=AT5G19500; hit=AT5G19500; species=arabidopsis; confidence=high
产物	Tryptophan/tyrosine permease [Source:NCBI gene (formerly Entrezgene);Acc:832070]; symbol=AT5G19500; hit=AT5G19500; species=arabidopsis; confidence=high
Arabidopsis	`AT5G19500` (AT5G19500) Tryptophan/tyrosine permease [Source:NCBI gene (formerly Entrezgene);Acc:832070] identity=57; qcov=1.1; evalue=1.43e-152; confidence=high
Rice	`Os07g0662800` - identity=44.2; qcov=0.187; evalue=1.02e-10; confidence=weak
GO	GO:0003333 (amino acid transmembrane transport)
KEGG	-
Pfam	PF03222 (Trp_Tyr_perm)
InterPro	-
eggNOG	-
NR	GeneID:131017399

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057802124.1`
2	Chloroplast membrane	叶绿体膜	1.00000	`XP_057802124.1`
3	Chloroplast thylakoid	类囊体	0.20000	`XP_057802124.1`
4	Chloroplast thylakoid membrane	类囊体膜	0.20000	`XP_057802124.1`
5	Nucleus	细胞核	0.00000	`XP_057802124.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:26756970`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C56,C60
`Chr1:26757055`	`T`	`TG`	1bp_insertion	frameshift_variant	1	B122
`Chr1:26757055`	`T`	`TG`	1bp_insertion	CDS_variant	1	B122
`Chr1:26757070`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C56,C60
`Chr1:26757079`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A25,B131,B139,B67
`Chr1:26758565`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A11,A8,B7,C46
`Chr1:26760682`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B101,C40
`Chr1:26763640`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A16,B29
`Chr1:26764602`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B21,B22,B26,B41
`Chr1:26765328`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:26765339`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A8,B103,C46

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802124.1

495 aa

248

495

Trp_Tyr_perm

PF03222 Trp_Tyr_perm 107-486 aa

XP_057802134.1

464 aa

232

464

Trp_Tyr_perm

PF03222 Trp_Tyr_perm 114-455 aa

XP_057802143.1

443 aa

222

443

Trp_Tyr_perm

PF03222 Trp_Tyr_perm 107-313 aa PF03222 Trp_Tyr_perm 315-434 aa

XP_057802149.1

412 aa

206

412

Trp_Tyr_perm

PF03222 Trp_Tyr_perm 114-282 aa PF03222 Trp_Tyr_perm 283-403 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802124.1`	Pfam	`PF03222`	Trp_Tyr_perm	Family	107	486	4.7e-75	253.9	Tryptophan/tyrosine permease family
`XP_057802134.1`	Pfam	`PF03222`	Trp_Tyr_perm	Family	114	455	1.5e-60	206.1	Tryptophan/tyrosine permease family
`XP_057802143.1`	Pfam	`PF03222`	Trp_Tyr_perm	Family	107	313	8.8e-58	197.0	Tryptophan/tyrosine permease family
`XP_057802143.1`	Pfam	`PF03222`	Trp_Tyr_perm	Family	315	434	8.8e-58	197.0	Tryptophan/tyrosine permease family
`XP_057802149.1`	Pfam	`PF03222`	Trp_Tyr_perm	Family	114	282	1.7e-43	149.9	Tryptophan/tyrosine permease family
`XP_057802149.1`	Pfam	`PF03222`	Trp_Tyr_perm	Family	283	403	1.7e-43	149.9	Tryptophan/tyrosine permease family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057946166.1
TCGAACATAGGTGATGGATGATTTTTGCTCTGTAAAATGAATGGAAGTAATACGCCCACCTCATCCTCACCAGAACACAAACTCAACACATTAACAAACCCAAATATCAATAAACCAAGTGAAAATTCTTCACAACCTCATTAGCTCATGATAACGATGATGCTCTCTTCATTTTTAGTGTCACCATCTTCTTCCTTAGCCCACAGTCGTAAATCTTCATTTCTTCAAGGAAACCCAACACACGTAACCAAAATCAAGAA...

XM_057946151.1
GAACATAGGTGATGGATGATTTTTGCTCTGTAAAATGAATGGAAGTAATACGCCCACCTCATCCTCACCAGAACACAAACTCAACACATTAACAAACCCAAATATCAATAAACCAAGTGAAAATTCTTCACAACCTCATTAGCTCATGATAACGATGATGCTCTCTTCATTTTTAGTGTCACCATCTTCTTCCTTAGCCCACAGTCGTAAATCTTCATTTCTTCAAGGAAACCCAACACACGTAACCAAAATCAAGAACC...

CDS

4 records

下载 CDS FASTA

LOC131017399
ATGATAACGATGATGCTCTCTTCATTTTTAGTGTCACCATCTTCTTCCTTAGCCCACAGTCGTAAATCTTCATTTCTTCAAGGAAACCCAACACACGTAACCAAAATCAAGAACCCATCTTTTTTAATTGGGTTCTCCAAGTATAATGGAGCAGCAAATTTCGCTCATCCGTTCATTGATTCTTCTCTGAGGGCATCAGTGAAATGCTTCTCTCAGGAAGAAAAGCAGCAGTTGCTGCAAGAAGATGATGTGGAAGTTCA...

Protein

4 records

下载 Protein FASTA

XP_057802124.1
MITMMLSSFLVSPSSSLAHSRKSSFLQGNPTHVTKIKNPSFLIGFSKYNGAANFAHPFIDSSLRASVKCFSQEEKQQLLQEDDVEVHEFGRLFSNLNQATLKREPGSLSSSIFLVAGTTIGAGILAIPAVTQESGFLASAVTCILCWIFMVITGLLIAEVNVSTMRELGTGGVSLVSMAMRTLGNVGVQVACWSYIFIHYALLVAYVARSSEILTNFLGIPIWETATLFSMIFGGLCYFGSQGIIGAVNGALVISIIASF...

XP_057802134.1
MITMMLSSFLVSPSSSLAHSRKSSFLQGNPTHVTKIKNPSFLIGFSKYNGAANFAHPFIDSSLRASVKCFSQEEKQQLLQEDDVEVHEFGRLFSNLNQATLKREPGSLSSSIFLVAGTTVITGLLIAEVNVSTMRELGTGGVSLVSMAMRTLGNVGVQVACWSYIFIHYALLVAYVARSSEILTNFLGIPIWETATLFSMIFGGLCYFGSQGIIGAVNGALVISIIASFVALVVVASGDLHWDFLLKANLEAAPRSIPII...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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