当前解析结果
SmilChr03G000795| 统一新 Gene ID | SmilChr03G000795 |
|---|---|
| 名称 | SmilChr03G000795 |
| 描述 | probable disease resistance protein At1g58602 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 9069358 - 9074240 / - |
| NCBI Gene ID | LOC131017407 |
|---|---|
| GeneID | 131017407 |
| locus_tag | - |
| NCBI Name | LOC131017407 |
| 原始查询 | LOC131017407 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable disease resistance protein At1g58602 |
| 产物 | probable disease resistance protein At1g58602 |
| Arabidopsis | AT5G35450 (AT5G35450)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=26.9; qcov=0.916; evalue=5.34e-53; confidence=low |
| Rice | Os01g0547000- identity=26.3; qcov=0.897; evalue=9.38e-56; confidence=low |
| GO | GO:0005515 (protein binding); GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017407 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.60000 | XP_057802141.1 |
| 2 | Cell membrane | 细胞膜 | 0.60000 | XP_057802141.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057802141.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057802141.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057802141.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:9069587 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A20 |
Chr3:9069626 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A20 |
Chr3:9069656 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A20,B82 |
Chr3:9069671 |
CAG |
C |
2bp_deletion | frameshift_variant | 2 | A20,B82 |
Chr3:9069671 |
CAG |
C |
2bp_deletion | CDS_variant | 2 | A20,B82 |
Chr3:9069678 |
A |
ATT |
2bp_insertion | frameshift_variant | 3 | A20,B122,B82 |
Chr3:9069678 |
A |
ATT |
2bp_insertion | CDS_variant | 3 | A20,B122,B82 |
Chr3:9069689 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A20,B122,B82 |
Chr3:9069713 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A20,A5,B122,B139,B82 |
Chr3:9069754 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A20,A5,B122 |
Chr3:9069759 |
TTC |
T |
2bp_deletion | frameshift_variant | 2 | A20,B122 |
Chr3:9069759 |
TTC |
T |
2bp_deletion | CDS_variant | 2 | A20,B122 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057802141.1PF00931
NB-ARC 135-293 aa
PF23598
LRR_14 503-750 aa
XP_057802142.1PF00931
NB-ARC 135-293 aa
PF23598
LRR_14 503-750 aa
XP_057802144.1PF00931
NB-ARC 135-293 aa
PF23598
LRR_14 503-750 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802141.1 |
Pfam | PF00931 |
NB-ARC | Domain | 135 | 293 | 2.4e-27 | 96.3 | NB-ARC domain |
XP_057802141.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 503 | 750 | 3.3e-29 | 102.5 | Leucine-rich repeat region |
XP_057802142.1 |
Pfam | PF00931 |
NB-ARC | Domain | 135 | 293 | 2.4e-27 | 96.3 | NB-ARC domain |
XP_057802142.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 503 | 750 | 3.3e-29 | 102.5 | Leucine-rich repeat region |
XP_057802144.1 |
Pfam | PF00931 |
NB-ARC | Domain | 135 | 293 | 2.4e-27 | 96.3 | NB-ARC domain |
XP_057802144.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 503 | 750 | 3.3e-29 | 102.5 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。