当前解析结果
SmilChr03G000796| 统一新 Gene ID | SmilChr03G000796 |
|---|---|
| 名称 | SmilChr03G000796 |
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 9106156 - 9111638 / + |
| NCBI Gene ID | LOC131017408 |
|---|---|
| GeneID | 131017408 |
| locus_tag | - |
| NCBI Name | LOC131017408 |
| 原始查询 | LOC131017408 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 产物 | putative late blight resistance protein homolog R1A-10 |
| Arabidopsis | AT5G35450 (AT5G35450)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=28.6; qcov=1.02; evalue=2.63e-92; confidence=low |
| Rice | Os08g0424700 (P0456B03.103)- identity=27.6; qcov=0.975; evalue=1.45e-72; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017408 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057802145.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057802145.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057802145.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057802145.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057802145.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:9106367 |
TCA |
T |
2bp_deletion | frameshift_variant | 3 | A23,B14,C16 |
Chr3:9106367 |
TCA |
T |
2bp_deletion | CDS_variant | 3 | A23,B14,C16 |
Chr3:9106375 |
GGC |
* |
2bp_deletion | CDS_variant | 4 | A23,B14,B90,C16 |
Chr3:9106383 |
GA |
G |
1bp_deletion | frameshift_variant | 4 | A23,B14,B90,C16 |
Chr3:9106383 |
GA |
G |
1bp_deletion | CDS_variant | 4 | A23,B14,B90,C16 |
Chr3:9106487 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A1,C54 |
Chr3:9106539 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B130 |
Chr3:9106581 |
A |
AC |
1bp_insertion | frameshift_variant | 5 | B115,B59,B84,C1,D2 |
Chr3:9106581 |
A |
AC |
1bp_insertion | CDS_variant | 5 | B115,B59,B84,C1,D2 |
Chr3:9106650 |
G |
GA |
1bp_insertion | frameshift_variant | 75 | A1,A14,A16,A19,A22,A23,A24,B103,B104,B109,B112,B115,B118,B123,B127,B129,B130,B131,B133,B139,B14,B15,B16,B24,B27,B29,B32,B36,B37,B39,B4,B40,B46,B52,B54,B57,B58,B59,B64,B65,B69,B72,B76,B83,B84,B88,B89,B90,B92,B94,C1,C10,C13,C24,C29,C3,C36,C37,C46,C49,C52,C54,C55,C61,C7,C71,C73,C74,C77,C9,D1,D10,D2,D3,D4 |
Chr3:9106673 |
A |
AT |
1bp_insertion | frameshift_variant | 47 | A2,A4,B100,B102,B103,B105,B109,B117,B118,B119,B123,B13,B130,B133,B136,B137,B139,B14,B20,B26,B29,B36,B37,B4,B50,B55,B57,B67,B69,B72,B78,B88,B89,B90,B92,C29,C32,C50,C68,C72,C77,C78,C82,C85,C9,D4,D8 |
Chr3:9106713 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C31 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057802145.1PF18052
Rx_N 5-96 aa
PF00931
NB-ARC 152-321 aa
PF23559
WHD_DRP 413-483 aa
PF23598
LRR_14 538-864 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802145.1 |
Pfam | PF18052 |
Rx_N | Domain | 5 | 96 | 1e-19 | 71.1 | Rx N-terminal domain |
XP_057802145.1 |
Pfam | PF00931 |
NB-ARC | Domain | 152 | 321 | 8.2e-41 | 140.2 | NB-ARC domain |
XP_057802145.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 413 | 483 | 6.3e-21 | 74.9 | Disease resistance protein Winged helix domain |
XP_057802145.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 538 | 864 | 1.3e-14 | 54.4 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。