Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000811`

染色体: Chr03 坐标: 9294631-9297653 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000811`
名称	SmilChr03G000811
描述	probable disease resistance RPP8-like protein 2
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	9294631 - 9297653 / `+`

ID 对照

NCBI Gene ID	`LOC131017415`
GeneID	`131017415`
locus_tag	`-`
NCBI Name	`LOC131017415`
原始查询	`LOC131017415`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable disease resistance RPP8-like protein 2
产物	probable disease resistance RPP8-like protein 2
Arabidopsis	`AT1G53350` (AT1G53350) Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:841771] identity=36.5; qcov=0.592; evalue=6.46e-30; confidence=medium
Rice	`Os10g0162854` - identity=33.2; qcov=0.532; evalue=1.7e-25; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF13191 (AAA_16); PF13401 (AAA_22)
InterPro	-
eggNOG	-
NR	GeneID:131017415

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057802150.1`
2	Cytosol	细胞质基质	0.40000	`XP_057802151.1`
3	Nucleus	细胞核	0.00000	`XP_057802150.1`
4	Chromosome	染色体	0.00000	`XP_057802150.1`
5	Centromere	着丝粒	0.00000	`XP_057802150.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:9295620`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B93,C53,D10
`Chr3:9295682`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B93,C53
`Chr3:9295854`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr3:9295857`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B28,B89,C27
`Chr3:9295941`	`T`	`TCC`	2bp_insertion	frameshift_variant	5	A9,B122,B125,C27,C66
`Chr3:9295941`	`T`	`TCC`	2bp_insertion	CDS_variant	5	A9,B122,B125,C27,C66
`Chr3:9295944`	`GGA`	`G`	2bp_deletion	frameshift_variant	5	A9,B122,B125,C27,C66
`Chr3:9295944`	`GGA`	`G`	2bp_deletion	CDS_variant	5	A9,B122,B125,C27,C66
`Chr3:9295956`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B111,B140,B50
`Chr3:9295992`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B111
`Chr3:9296003`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B111,B140
`Chr3:9296007`	`AC`	`A`	1bp_deletion	frameshift_variant	5	B126,B42,C19,C20,C6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802150.1

425 aa

212

425

AAA_16

NB-ARC

AAA_22

PF13191 AAA_16 116-229 aa PF00931 NB-ARC 129-296 aa PF13401 AAA_22 134-232 aa

XP_057802151.1

402 aa

201

402

AAA_16

NB-ARC

AAA_22

PF13191 AAA_16 93-206 aa PF00931 NB-ARC 106-273 aa PF13401 AAA_22 111-209 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802150.1`	Pfam	`PF13191`	AAA_16	Domain	116	229	6.9e-08	33.9	AAA ATPase domain
`XP_057802150.1`	Pfam	`PF00931`	NB-ARC	Domain	129	296	3.7e-33	115.2	NB-ARC domain
`XP_057802150.1`	Pfam	`PF13401`	AAA_22	Domain	134	232	3.5e-07	31.3	AAA domain
`XP_057802151.1`	Pfam	`PF13191`	AAA_16	Domain	93	206	6.2e-08	34.1	AAA ATPase domain
`XP_057802151.1`	Pfam	`PF00931`	NB-ARC	Domain	106	273	3.4e-33	115.4	NB-ARC domain
`XP_057802151.1`	Pfam	`PF13401`	AAA_22	Domain	111	209	3.1e-07	31.5	AAA domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057946167.1
ATATTGTGGGGAGCAGTTGGCAGTGCTGCTGCTTCTGATTGGAAATAACAACCAATAATCAATTTTCCTAATTATTAATTAGTATAGTATTCAACTTTAGCTTACGCTATAACAACTAAATATCTATCCTTACAAACAGTTGGTGTAAATCAAATTGTTTTCATGATACATCTGGAGCTAAATTAACACTTTTTCCTGAACTTGGAACAAGATTTTGTGGGCTTCTGCTCCAGATTGAATTTATTTTTCTCTTCTTTGAT...

XM_057946168.1
GCTGCTTCTGATTGGAAATAACAACCAATAATCAATTTTCCTAATTATTAATTAGTATAGTATTCAACTTTAGCTTACGCTATAACAACTAAATATCTATCCTTACAAACAGTTGGTGTAAATCAAATTGTTTTCATGATACATCTGGAGCTAAATTAACACTTTTTCCTGAACTTGGAACAAGATTTTGTGGGCTTCTGCTCCAGATTGAATTTATTTTTCTCTTCTTTGATAATTTTGGTTCTTGCTTTTTGAGGAGA...

CDS

2 records

下载 CDS FASTA

LOC131017415
ATGGGATCTTCCAGCAGTGCGCCAAAACGAGCTAACCGCATTCCTCAGCGAGATGATGACCACGTCAACATGGCCCCGCCCCTCAACATCGATGAAAACATATTTGATCTCTCCTCGAAGAGAGATTCAATCAGTGAGATAAGGACGTGCATGCCTGAATTCAGAGTTGATGGGGCAGAGACAACATCAGAAAATGTTGGAGAAGAAGAAGACGAAGTTGATGGGGTGGAGACGTCATCAGAAAATGCTGGTGAAGAGGA...

LOC131017415
ATGGCCCCGCCCCTCAACATCGATGAAAACATATTTGATCTCTCCTCGAAGAGAGATTCAATCAGTGAGATAAGGACGTGCATGCCTGAATTCAGAGTTGATGGGGCAGAGACAACATCAGAAAATGTTGGAGAAGAAGAAGACGAAGTTGATGGGGTGGAGACGTCATCAGAAAATGCTGGTGAAGAGGAAGAAGACTATGAAGATATGGGAGTTGATGGGGCGGAGACGACATCAGAAGTTGTTGGAGAAGAAGGAGA...

Protein

2 records

下载 Protein FASTA

XP_057802150.1
MGSSSSAPKRANRIPQRDDDHVNMAPPLNIDENIFDLSSKRDSISEIRTCMPEFRVDGAETTSENVGEEEDEVDGVETSSENAGEEEEDYEDMGVDGAETTSEVVGEEGDDEDKYMEELKGYICSTFWEELSTVLITGMAGIGKTTLARQVYNHPHVVAQFKGRAWVCVTGLTGKEVLMKLIRQVVYSKKLEGDSLLEKMDRRDKKSLQEMLHQHLKGKRYLIVLDDVHKEMIWESIWEGLPHEKKSSKLLLTSRSKNTR...

XP_057802151.1
MAPPLNIDENIFDLSSKRDSISEIRTCMPEFRVDGAETTSENVGEEEDEVDGVETSSENAGEEEEDYEDMGVDGAETTSEVVGEEGDDEDKYMEELKGYICSTFWEELSTVLITGMAGIGKTTLARQVYNHPHVVAQFKGRAWVCVTGLTGKEVLMKLIRQVVYSKKLEGDSLLEKMDRRDKKSLQEMLHQHLKGKRYLIVLDDVHKEMIWESIWEGLPHEKKSSKLLLTSRSKNTRRDPFSSDEMESRIHYAYRMQPLN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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